RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 L1RE1Q9UN81 338 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 SLC12A4Q9UP95 1085 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 SPEF1Q9Y4P9 236 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 TDRD6O60522 2096 aaKnown RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 C4orf47A7E2U8 309 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 CCDC22O60826 627 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 SEC22BO75396 215 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 PIRTP0C851 137 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 NR2F1P10589 423 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 HOXB6P17509 224 aaKnown RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 EPORP19235 508 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 ITIH2P19823 946 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 CCND1P24385 295 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 ADRA1BP35368 520 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 PBX2P40425 430 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 DIO3P55073 304 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 CDH15P55291 814 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 NAA20P61599 178 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 ECM1Q16610 540 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 CRTC1Q6UUV9 634 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 BEND5Q7L4P6 421 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 PPP1R3BQ86XI6 285 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 FAM160A2Q8N612 972 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 NETO1Q8TDF5 533 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 C16orf70Q9BSU1 422 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 PAK6Q9NQU5 681 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 CDYLQ9Y232 598 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 AP1M2Q9Y6Q5 423 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 PEAK1Q9H792 1746 aa4.96□□□□□ -1.61
SCN1A-218ENST00000640036 A8MUA0 341 aa4.96□□□□□ -1.61
SCN1A-218ENST00000640036 E7ENQ6 273 aa4.96□□□□□ -1.61
SCN1A-218ENST00000640036 MFN2O95140 757 aa4.96□□□□□ -1.61
SCN1A-218ENST00000640036 ZNF143P52747 638 aaPredicted RBP4.96□□□□□ -1.61
SCN1A-218ENST00000640036 PTGES3Q15185 160 aaKnown RBP4.96□□□□□ -1.61
SCN1A-218ENST00000640036 DEFB124Q8NES8 71 aa4.96□□□□□ -1.61
SCN1A-218ENST00000640036 OR4E2Q8NGC2 313 aa4.96□□□□□ -1.61
SCN1A-218ENST00000640036 SLC22A8Q8TCC7 542 aa4.96□□□□□ -1.61
SCN1A-218ENST00000640036 ZDHHC1Q8WTX9 485 aa4.96□□□□□ -1.61
SCN1A-218ENST00000640036 CYP2S1Q96SQ9 504 aa4.96□□□□□ -1.61
SCN1A-218ENST00000640036 RACGAP1Q9H0H5 632 aa4.96□□□□□ -1.61
SCN1A-218ENST00000640036 ADPRHL2Q9NX46 363 aa4.96□□□□□ -1.61
SCN1A-218ENST00000640036 NDUFA13Q9P0J0 144 aa4.96□□□□□ -1.61
SCN1A-218ENST00000640036 CDC14CA4D256 554 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 FAM220BPB1ANY3 271 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 MEN1O00255 615 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 DDX3XO00571 662 aaKnown RBP eCLIP4.96□□□□□ -1.62
SCN1A-218ENST00000640036 PROS1P07225 676 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 CNTFP26441 200 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 PNLIPRP1P54315 467 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 ECH1Q13011 328 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 PTPN21Q16825 1174 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 MYLK3Q32MK0 819 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 SPANXN3Q5MJ09 141 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 POMZP3Q6PJE2 187 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 LCLAT1Q6UWP7 414 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 DOCK3Q8IZD9 2030 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 DAZLQ92904 295 aaKnown RBP4.96□□□□□ -1.62
SCN1A-218ENST00000640036 ZBTB10Q96DT7 871 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 MMABQ96EY8 250 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-218ENST00000640036 KIFC1Q9BW19 673 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 GPR62Q9BZJ7 368 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 NOL6Q9H6R4 1146 aaKnown RBP4.96□□□□□ -1.62
SCN1A-218ENST00000640036 SRPK3Q9UPE1 567 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 PTRH2Q9Y3E5 179 aaKnown RBP4.96□□□□□ -1.62
SCN1A-218ENST00000640036 RNF103-CHMP3A0A140T963 221 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 C9IYK1 514 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 KLRC4-KLRK1H3BQV0 150 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 PROSCO94903 275 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 MSR1P21757 451 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 GRM7Q14831 915 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 RALGPS1Q5JS13 557 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 TCTE1Q5JU00 501 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 PCID2Q5JVF3 399 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 SCARA3Q6AZY7 606 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 PSAPL1Q6NUJ1 521 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 TMEM132CQ8N3T6 1108 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 ZSCAN4Q8NAM6 433 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-218ENST00000640036 OR4L1Q8NH43 312 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 ASB15Q8WXK1 588 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 ACOT12Q8WYK0 555 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 RBM15Q96T37 977 aaKnown RBP eCLIP4.96□□□□□ -1.62
SCN1A-218ENST00000640036 YIPF4Q9BSR8 244 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 ULBP3Q9BZM4 244 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 RIBC2Q9H4K1 309 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 ITM2CQ9NQX7 267 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 NOP53Q9NZM5 478 aaKnown RBP4.96□□□□□ -1.62
SCN1A-218ENST00000640036 TTC26A0AVF1 554 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 BTBD17A6NE02 478 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 E9PBE3 544 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 XKRYO14609 159 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 USP1O94782 785 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 SNHG28P0DPA3 235 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 FDPSP14324 419 aaKnown RBP4.96□□□□□ -1.62
SCN1A-218ENST00000640036 LRPAP1P30533 357 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 CLCN1P35523 988 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 RPL4P36578 427 aaKnown RBP4.96□□□□□ -1.62
SCN1A-218ENST00000640036 MANFP55145 182 aaKnown RBP4.96□□□□□ -1.62
SCN1A-218ENST00000640036 ACTR3P61158 418 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 TFF2Q03403 129 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 MTAPQ13126 283 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms