RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 SLC28A1O00337 649 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 TXNL1O43396 289 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 PLOD3O60568 738 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 STX11O75558 287 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 SERPINA1P01009 418 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 HOXD4P09016 255 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 PROZP22891 400 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 IL1R2P27930 398 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 PBLDP30039 288 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 MLLT10P55197 1068 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 ORC2Q13416 577 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 AQP6Q13520 282 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 SNAPC1Q16533 368 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 IL17AQ16552 155 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 RNF212Q495C1 297 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 FAM98BQ52LJ0 330 aaKnown RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 KDELC1Q6UW63 502 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 SPPL2CQ8IUH8 684 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 PGBD3Q8N328 593 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 PLD5Q8N7P1 536 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 FCGR1BQ92637 280 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 SLC45A3Q96JT2 553 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 DCLRE1CQ96SD1 692 aaKnown RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 AGAP2Q99490 1192 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 VAT1Q99536 393 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 ZNF436Q9C0F3 470 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 ZNF768Q9H5H4 540 aaKnown RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 GAREM1Q9H706 876 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 UCK1Q9HA47 277 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 CARS2Q9HA77 564 aaKnown RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 ERVK13-1Q9NX77 482 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 SPHK1Q9NYA1 384 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 DNPEPQ9ULA0 475 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 GMPPBQ9Y5P6 360 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 ALG5Q9Y673 324 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 HSPE1-MOB4S4R3N1 261 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 N4BP2Q86UW6 1770 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 A0A1W2PPL8 197 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 G3V2T6 193 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 TRIM13O60858 407 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 CRCPO75575 148 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 UGT2B17O75795 530 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 POP4O95707 220 aaKnown RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 RAB3DO95716 219 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 RB1P06400 928 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 SNRPB2P08579 225 aaKnown RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 BMP3P12645 472 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 HOXB3P14651 431 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 HMGCLP35914 325 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 RPL14P50914 215 aaKnown RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 CTSWP56202 376 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 PTPN20Q4JDL3 420 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 CLLU1Q5K131 121 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 LRRC66Q68CR7 880 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 PRSS48Q7RTY5 328 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 UBE2J2Q8N2K1 259 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 GTF3C2Q8WUA4 911 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 DDX1Q92499 740 aaKnown RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 COPS5Q92905 334 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 GPRASP2Q96D09 838 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 DUS3LQ96G46 650 aaKnown RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 NSMCE2Q96MF7 247 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 MMP19Q99542 508 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 CRB3Q9BUF7 120 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 ZNF518BQ9C0D4 1074 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 ZNF275Q9NSD4 429 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 WWOXQ9NZC7 414 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 VSX1Q9NZR4 365 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 SLCO3A1Q9UIG8 710 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 ATXN7L1Q9ULK2 861 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 KIAA1024Q9UPX6 916 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 RUVBL1Q9Y265 456 aaKnown RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 DRG1Q9Y295 367 aaKnown RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 ASB4Q9Y574 426 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 SLC22A7Q9Y694 548 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 DIP2AQ14689 1571 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 ASB14A6NK59 587 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 H0YCG3 227 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 TERTO14746 1132 aaKnown RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 UBDO15205 165 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 OIP5O43482 229 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 RFPL1O75677 317 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 RLN2P04090 185 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 ANXA6P08133 673 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 CYP19A1P11511 503 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 EDN3P14138 238 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 AKAP5P24588 427 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 IVDP26440 423 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 ADORA2AP29274 412 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 CTSKP43235 329 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 ARSDP51689 593 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 ACLYP53396 1101 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 NKX3-2P78367 333 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 PURAQ00577 322 aaKnown RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 GABPAQ06546 454 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 DAG1Q14118 895 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 ZMAT1Q5H9K5 638 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 RANBP10Q6VN20 620 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 MRPL10Q7Z7H8 261 aaKnown RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 DENND6AQ8IWF6 608 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms