RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 CINPQ9BW66 212 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-214ENST00000637038 LRRC3Q9BY71 257 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 UNKQ9C0B0 810 aaKnown RBP3.94□□□□□ -1.78
SCN1A-214ENST00000637038 DERL2Q9GZP9 239 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 KATNBL1Q9H079 304 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 RAD21L1Q9H4I0 556 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 GSTO2Q9H4Y5 243 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 CSNK1G1Q9HCP0 422 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 NIPSNAP3AQ9UFN0 247 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-214ENST00000637038 ZNHIT2Q9UHR6 403 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 ZMYM5Q9UJ78 669 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 DENND4CQ5VZ89 1909 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 DNAH14Q0VDD8 3507 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 NEMP2A6NFY4 417 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 SYNCRIPO60506 623 aaKnown RBP3.94□□□□□ -1.78
SCN1A-214ENST00000637038 CYBBP04839 570 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 ALOX5P09917 674 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 THRBP10828 461 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 GPX3P22352 226 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 FDXRP22570 491 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 HTR1EP28566 365 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 SLC5A2P31639 672 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 PIK3CGP48736 1102 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 HLCSP50747 726 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 KCNQ1P51787 676 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 POLR2JP52435 117 aaKnown RBP3.94□□□□□ -1.78
SCN1A-214ENST00000637038 IL2P60568 153 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 ERVK-8P63133 956 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 SOX4Q06945 474 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-214ENST00000637038 BTG3Q14201 252 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-214ENST00000637038 ZNF846Q147U1 533 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 MYBPC3Q14896 1274 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 TRIM16LQ309B1 348 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 VPS26BQ4G0F5 336 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 UBXN11Q5T124 520 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 CLEC6AQ6EIG7 209 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 MSANTD2Q6P1R3 559 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 ZNF773Q6PK81 442 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 LARP4Q71RC2 724 aaKnown RBP eCLIP3.94□□□□□ -1.78
SCN1A-214ENST00000637038 GPR180Q86V85 440 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 GPSM1Q86YR5 675 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 EID3Q8N140 333 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 SVOPQ8N4V2 548 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 METTL25Q8N6Q8 603 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 GPR150Q8NGU9 434 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 MAGEE2Q8TD90 523 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-214ENST00000637038 BRSK1Q8TDC3 778 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 GIPC3Q8TF64 312 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 FAM162AQ96A26 154 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 KIAA1191Q96A73 305 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 RMDN1Q96DB5 314 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 BTN2A3PQ96KV6 586 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 RNF145Q96MT1 663 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 TMEM209Q96SK2 561 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 OLFM1Q99784 485 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 DCUN1D5Q9BTE7 237 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 HGH1Q9BTY7 390 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 OSBPL10Q9BXB5 764 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 WDR12Q9GZL7 423 aaKnown RBP3.94□□□□□ -1.78
SCN1A-214ENST00000637038 ATXN3LQ9H3M9 355 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 AGO3Q9H9G7 860 aaKnown RBP3.94□□□□□ -1.78
SCN1A-214ENST00000637038 SDR39U1Q9NRG7 319 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-214ENST00000637038 AGPAT4Q9NRZ5 378 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 ATAD3AQ9NVI7 634 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 FAIMQ9NVQ4 179 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 SCN3BQ9NY72 215 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 NUDT4Q9NZJ9 180 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 ABCD2Q9UBJ2 740 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 UXTQ9UBK9 157 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-214ENST00000637038 SLC2A6Q9UGQ3 507 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 PCDHGB4Q9UN71 923 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 TLR6Q9Y2C9 796 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 PCDHGB5Q9Y5G0 923 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 TIMM13Q9Y5L4 95 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-214ENST00000637038 CASTOR2A6NHX0 329 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 F5H5T6 163 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 H3BMM5 538 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 TAF4O00268 1085 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 EEDO75530 441 aaKnown RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 BEST1O76090 585 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 RECQL5O94762 991 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 KCNH1O95259 989 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 NDST3O95803 873 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 MT-CO1P00395 513 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 EIF2S1P05198 315 aaKnown RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 ENO2P09104 434 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 RAP2AP10114 183 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 FOSL1P15407 271 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 CKMT2P17540 419 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 ATP6V1B2P21281 511 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 NFKBIAP25963 317 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 GABRB3P28472 473 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 MAPK1P28482 360 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 CA8P35219 290 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 GSK3BP49841 420 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 SCNN1GP51170 649 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 MLLT6P55198 1093 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 EIF4EBP2Q13542 120 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 ITGA7Q13683 1181 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 IMPG1Q17R60 797 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms