RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 ZNF24P17028 368 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 SHMT2P34897 504 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 POLR2IP36954 125 aaKnown RBP10.92□□□□□ -0.66
CLN3-244ENST00000636147 POLD2P49005 469 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 NUDT6P53370 316 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 TBX4P57082 545 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 PFKPQ01813 784 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 SLC10A7Q0GE19 358 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 VGLL4Q14135 290 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 ZNF605Q86T29 641 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 OSTM1Q86WC4 334 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 CIR1Q86X95 450 aaPredicted RBP10.92□□□□□ -0.66
CLN3-244ENST00000636147 FRS2Q8WU20 508 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 ASIC4Q96FT7 647 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 CLPBQ9H078 707 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 MARCH4Q9P2E8 410 aaPredicted RBP10.92□□□□□ -0.66
CLN3-244ENST00000636147 KRT87PA6NCN2 255 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 SYNDIG1LA6NDD5 238 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 ENO2P09104 434 aaPredicted RBP10.91□□□□□ -0.66
CLN3-244ENST00000636147 G6PDP11413 515 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 SLC26A3P40879 764 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 IL12RB1P42701 662 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 SCNN1GP51170 649 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 DNAJB13P59910 316 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 GALNT2Q10471 571 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 TUBA3CQ13748 450 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 CYBRD1Q53TN4 286 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 LCN8Q6JVE9 175 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 SPARTQ8N0X7 666 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 CRYBG2Q8N1P7 616 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 C2CD4AQ8NCU7 369 aaPredicted RBP10.91□□□□□ -0.66
CLN3-244ENST00000636147 NDNFQ8TB73 568 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 PSMG2Q969U7 264 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 SEPT5Q99719 369 aaPredicted RBP10.91□□□□□ -0.66
CLN3-244ENST00000636147 MYOCQ99972 504 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 POLR1EQ9GZS1 481 aaKnown RBP10.91□□□□□ -0.66
CLN3-244ENST00000636147 CXCL16Q9H2A7 254 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 SIAEQ9HAT2 523 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 KLHL20Q9Y2M5 609 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 ZNF701M0R085 212 aaPredicted RBP10.91□□□□□ -0.66
CLN3-244ENST00000636147 HIST1H2AGP0C0S8 130 aaPredicted RBP10.91□□□□□ -0.66
CLN3-244ENST00000636147 HIST1H2ADP20671 130 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 DCKP27707 260 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 ARSDP51689 593 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 CDKN2DP55273 166 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 ZDHHC21Q8IVQ6 265 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 TMEM132CQ8N3T6 1108 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 MINDY1Q8N5J2 469 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 TTC29Q8NA56 475 aaPredicted RBP10.91□□□□□ -0.66
CLN3-244ENST00000636147 OR52J3Q8NH60 311 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 HIST1H2AHQ96KK5 128 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 HIST1H2AJQ99878 128 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 H2AFJQ9BTM1 129 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 SLC2A11Q9BYW1 496 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 MUC13Q9H3R2 512 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 TNFRSF12AQ9NP84 129 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 IPPQ9Y573 584 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 RRN3P2A6NIE6 340 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 RGS14O43566 566 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 DFNA5O60443 496 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 ODC1P11926 461 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 BRCC3P46736 316 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 HSPA7P48741 367 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 PRIM2P49643 509 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 RFX4Q33E94 735 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 PDZK1Q5T2W1 519 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 UBE2UQ5VVX9 321 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 OVOS1Q6IE37 1185 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 TICAM1Q8IUC6 712 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 FUNDC1Q8IVP5 155 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 ALDH16A1Q8IZ83 802 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 NKAPQ8N5F7 415 aaKnown RBP10.91□□□□□ -0.66
CLN3-244ENST00000636147 ITPKCQ96DU7 683 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 SNX27Q96L92 541 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 SLC9A7Q96T83 725 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 NMRK2Q9NPI5 230 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 FAM118AQ9NWS6 357 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 OPTCQ9UBM4 332 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 DKK3Q9UBP4 350 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 VPS4AQ9UN37 437 aa10.91□□□□□ -0.66
CLN3-244ENST00000636147 J3KR12 359 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 FGF10O15520 208 aaPredicted RBP10.9□□□□□ -0.66
CLN3-244ENST00000636147 ECI2O75521 394 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 UROSP10746 265 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 IRF1P10914 325 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 GPX3P22352 226 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 ERVK-8P63133 956 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 INO80DQ53TQ3 878 aaPredicted RBP10.9□□□□□ -0.66
CLN3-244ENST00000636147 UGT3A1Q6NUS8 523 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 DEFB132Q7Z7B7 95 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 CFAP52Q8N1V2 620 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 SELENOMQ8WWX9 145 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 TMEM209Q96SK2 561 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 TUBA1CQ9BQE3 449 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 SLC25A51Q9H1U9 297 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 NEK6Q9HC98 313 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 INIPQ9NRY2 104 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 SH3BP4Q9P0V3 963 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 MAP10Q9P2G4 905 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 CRLS1Q9UJA2 301 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms