RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 GKN2Q86XP6 184 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 NAT14Q8WUY8 206 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 ZNF75CPQ92670 426 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 TP53INP1Q96A56 240 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 BTN2A3PQ96KV6 586 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 C8orf48Q96LL4 319 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 PLEKHG4BQ96PX9 1271 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 NXF3Q9H4D5 531 aaKnown RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 CERS4Q9HA82 394 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 KLRF1Q9NZS2 232 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 POLR3HQ9Y535 204 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 OTOL1A6NHN0 477 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 B8ZZF3 427 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 AHCYL1O43865 530 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 MAFKO60675 156 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 CPNE3O75131 537 aaKnown RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 PRAMEF12O95522 483 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 MT-ND5P03915 603 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 SELPP16109 830 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 ZNF16P17020 682 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 CHRNB4P30926 498 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 GNPDA1P46926 289 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 PKNOX1P55347 436 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 POU5F1Q01860 360 aaKnown RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 GRB10Q13322 594 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 EFR3AQ14156 821 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 UNC5AQ6ZN44 842 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 KAT2AQ92830 837 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 KLHL15Q96M94 604 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 CD163L1Q9NR16 1453 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 ARHGEF4Q9NR80 690 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 LYARQ9NX58 379 aaKnown RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 FKBP7Q9Y680 259 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 CHD4Q14839 1912 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 TULP4Q9NRJ4 1543 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 CEMIPQ8WUJ3 1361 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 LOC102724159A0A0B4J2E5 919 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 SH3D21A4FU49 640 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 NPIPA5E9PKD4 350 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 ITGA5P08648 1049 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 HOXB9P17482 250 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 CCNOP22674 350 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 RBL1P28749 1068 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 SSTR1P30872 391 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 CORO1AP31146 461 aaKnown RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 E2F2Q14209 437 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 PWP2Q15269 919 aaKnown RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 GPAT4Q86UL3 456 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 ATAD1Q8NBU5 361 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 ZMIZ2Q8NF64 920 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 SPPL2BQ8TCT7 592 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 TRAPPC12Q8WVT3 735 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 MARK4Q96L34 752 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 UCK2Q9BZX2 261 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 FARSBQ9NSD9 589 aaKnown RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 PACSIN3Q9UKS6 424 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 NPIPA1Q9UND3 350 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 MAP4K5Q9Y4K4 846 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 SPATA31A5Q5VU36 1347 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 SPATA31A7Q8IWB4 1347 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 MDFIC2A0A1B0GVS7 189 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 A0A1W2PQ45 241 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 A0A1W2PQY0 241 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 FAM205CA6NFA0 338 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 ARPC2O15144 300 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 FFAR2O15552 330 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 AP2A2O94973 939 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 LPLP06858 475 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 ATF4P18848 351 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 ZNF41P51814 821 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 ITGA7Q13683 1181 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 ENPP2Q13822 863 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 TMEM44Q2T9K0 475 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 VSTM1Q6UX27 236 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 POU5F2Q8N7G0 328 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 ANKRD52Q8NB46 1076 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 ACMSDQ8TDX5 336 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 HDAC7Q8WUI4 952 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 EPYCQ99645 322 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 PDCD2LQ9BRP1 358 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 OSBPL11Q9BXB4 747 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 EHD1Q9H4M9 534 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 MKKSQ9NPJ1 570 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 MED11Q9P086 117 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 RCOR3Q9P2K3 495 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 MAGEL2Q9UJ55 1249 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 PLAGL2Q9UPG8 496 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 BTRCQ9Y297 605 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 RPH3AQ9Y2J0 694 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 PADI2Q9Y2J8 665 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 MID1O15344 667 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 POP4O95707 220 aaKnown RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 CYP4B1P13584 511 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 ZNF35P13682 527 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 NCK1P16333 377 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 VGLL4Q14135 290 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 SEC23AQ15436 765 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 PRAMEF17Q5VTA0 474 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 NOXRED1Q6NXP6 359 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms