RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 C1orf127Q8N9H9 656 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 GTF3C2Q8WUA4 911 aaPredicted RBP10.12□□□□□ -0.79
VPS39-214ENST00000614932 AHCYL2Q96HN2 611 aaKnown RBP10.12□□□□□ -0.79
VPS39-214ENST00000614932 PPP1R2P1Q96PQ5 205 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 MLPHQ9BV36 600 aaPredicted RBP10.12□□□□□ -0.79
VPS39-214ENST00000614932 ZNF416Q9BWM5 594 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 RAB6CQ9H0N0 254 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 XYLT2Q9H1B5 865 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 UNC93B1Q9H1C4 597 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 CYP4F12Q9HCS2 524 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 TMLHEQ9NVH6 421 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 ERAP1Q9NZ08 941 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 MBD2Q9UBB5 411 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 SIX4Q9UIU6 781 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 OSGIN1Q9UJX0 560 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 CCL15-CCL14A0A0B4J2E2 113 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 IGKV6-21A0A0C4DH24 114 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 LINC00587B1AMM8 73 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 TRIM24O15164 1050 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 AKR7A2O43488 359 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 HBP1O60381 514 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 SNX4O95219 450 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 AMHP03971 560 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 PGRP06401 933 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 HTR1AP08908 422 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 SELLP14151 372 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 TGM2P21980 687 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 GZMKP49863 264 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 NRLP54845 237 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 GABARAPL2P60520 117 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 NFX1Q12986 1120 aaKnown RBP10.12□□□□□ -0.79
VPS39-214ENST00000614932 SEMA3AQ14563 771 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 ZNF273Q14593 569 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 CCL15Q16663 113 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 AMHR2Q16671 573 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 ZNF404Q494X3 552 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 PIK3R6Q5UE93 754 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 TAPT1Q6NXT6 567 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 ILDR2Q71H61 639 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 PLPPR4Q7Z2D5 763 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 GPAT4Q86UL3 456 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 PIGZQ86VD9 579 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 PARP16Q8N5Y8 322 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 GPRC5AQ8NFJ5 357 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 MAPK15Q8TD08 544 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 LRRN4Q8WUT4 740 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 PDXPQ96GD0 296 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 FOPNLQ96NB1 174 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 HDHD5Q9BXW7 423 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 MRPL47Q9HD33 250 aaKnown RBP10.12□□□□□ -0.79
VPS39-214ENST00000614932 HPS4Q9NQG7 708 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 PCDHB16Q9NRJ7 776 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 CIB4A0PJX0 185 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 SH3D21A4FU49 640 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 E5RI56 91 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 H0Y626 953 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 ANGPT2O15123 496 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 GREM1O60565 184 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 SLC22A5O76082 557 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 ARF4P18085 180 aaPredicted RBP10.11□□□□□ -0.79
VPS39-214ENST00000614932 RPS5P46782 204 aaKnown RBP10.11□□□□□ -0.79
VPS39-214ENST00000614932 RELQ04864 619 aaPredicted RBP10.11□□□□□ -0.79
VPS39-214ENST00000614932 PCLAFQ15004 111 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 PCBP1Q15365 356 aaKnown RBP eCLIP10.11□□□□□ -0.79
VPS39-214ENST00000614932 AANATQ16613 207 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 PTPN20Q4JDL3 420 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 BCL7AQ4VC05 210 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 RAP1GAP2Q684P5 730 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 LIPIQ6XZB0 460 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 P3H2Q8IVL5 708 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 C10orf107Q8IVU9 208 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 C12orf29Q8N999 325 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 FAM110BQ8TC76 370 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 SLC45A3Q96JT2 553 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 APBA2Q99767 749 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 APOL5Q9BWW9 433 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 NUAK2Q9H093 628 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 FZD8Q9H461 694 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 SETD4Q9NVD3 440 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 EHD3Q9NZN3 535 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 OPTCQ9UBM4 332 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 AURKCQ9UQB9 309 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 PSAT1Q9Y617 370 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 KAT6AQ92794 2004 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 TCRBV7S3A2A0A539 114 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 TCAF2A6NFQ2 919 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 HCRTO43612 131 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 NDUFS6O75380 124 aaKnown RBP10.11□□□□□ -0.79
VPS39-214ENST00000614932 TMEM63AO94886 807 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 SNAPINO95295 136 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 C1QAP02745 245 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 PRKCDQ05655 676 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 SLAMF1Q13291 335 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 CDO1Q16878 200 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 ZNF667Q5HYK9 610 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 SH3PXD2AQ5TCZ1 1133 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 P2RY8Q86VZ1 359 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 PHF13Q86YI8 300 aaPredicted RBP10.11□□□□□ -0.79
VPS39-214ENST00000614932 TCTE3Q8IZS6 198 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 PCDH20Q8N6Y1 951 aaKnown RBP10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms