RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 SNX2O60749 519 aa16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 RFPL3O75679 317 aa16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 AP2A2O94973 939 aa16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 GP1BAP07359 652 aa16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 F3P13726 295 aa16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 PBLDP30039 288 aaPredicted RBP16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 ELK3P41970 407 aa16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 TTPAP49638 278 aa16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 MAZP56270 477 aaKnown RBP16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 CBLBQ13191 982 aa16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 CRYMQ14894 314 aa16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 LONRF1Q17RB8 773 aa16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 CCDC157Q569K6 752 aa16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 HP1BP3Q5SSJ5 553 aaPredicted RBP16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 MRNIPQ6NTE8 343 aa16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 NEPROQ6NW34 567 aa16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 IYDQ6PHW0 289 aa16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 CCNJLQ8IV13 435 aa16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 GPR150Q8NGU9 434 aa16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 OR2L2Q8NH16 312 aa16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 IFI44Q8TCB0 444 aa16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 SEC14L1Q92503 715 aa16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 NAT6Q93015 286 aa16.26■□□□□ 0.19
CCDC28A-202ENST00000611852 ESYT3A0FGR9 886 aa16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 TTC4O95801 387 aa16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 IDSP22304 550 aa16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 RPL10P27635 214 aaKnown RBP16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 PMLP29590 882 aa16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 PLTPP55058 493 aa16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 PDIA2Q13087 525 aaKnown RBP16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 NFE2L1Q14494 772 aa16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 PERM1Q5SV97 790 aa16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 XKR5Q6UX68 686 aa16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 FAM83HQ6ZRV2 1179 aaPredicted RBP16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 ERMP1Q7Z2K6 904 aa16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 EFL1Q7Z2Z2 1120 aaKnown RBP16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 SFRP1Q8N474 314 aa16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 ARL14Q8N4G2 192 aa16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 OTUD6BQ8N6M0 293 aa16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 OR6C4Q8NGE1 309 aa16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 ADAMTS14Q8WXS8 1223 aa16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 CARD6Q9BX69 1037 aa16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 PLAC1Q9HBJ0 212 aa16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 ZC3H7BQ9UGR2 993 aaKnown RBP16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 CHMP2BQ9UQN3 213 aa16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 RP1P56715 2156 aa16.25■□□□□ 0.19
CCDC28A-202ENST00000611852 TRBV23OR9-2A0A075B6M9 112 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 C17orf113A0A1B0GUU1 675 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 BHMG1C9JSJ3 638 aaPredicted RBP16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 QSOX1O00391 747 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 NUDT21O43809 227 aaKnown RBP16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 CDK4P11802 303 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 GLB1P16278 677 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 OGNP20774 298 aaKnown RBP16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 CAV1Q03135 178 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 SEPT7Q16181 437 aaKnown RBP16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 TYSND1Q2T9J0 566 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 ZNF658BQ4V348 819 aaPredicted RBP16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 GLE1Q53GS7 698 aaKnown RBP16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 SPANXN3Q5MJ09 141 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 AGAP9Q5VTM2 703 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 METRNLQ641Q3 311 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 ABRAXAS1Q6UWZ7 409 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 ZDHHC24Q6UX98 284 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 WASH2PQ6VEQ5 465 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 SDCCAG8Q86SQ7 713 aaPredicted RBP16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 CILP2Q8IUL8 1156 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 UNC5BQ8IZJ1 945 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 FBXO25Q8TCJ0 367 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 SLC37A2Q8TED4 501 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 CCM2Q9BSQ5 444 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 VPS37BQ9H9H4 285 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 L2HGDHQ9H9P8 463 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 WASH6PQ9NQA3 447 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 C20orf96Q9NUD7 363 aaPredicted RBP16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 SCHIP1Q9P0W5 487 aaPredicted RBP16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 LRIT1Q9P2V4 623 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 DMGDHQ9UI17 866 aaKnown RBP16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 RABGEF1Q9UJ41 708 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 RNF215Q9Y6U7 377 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 PDZK1P1A8MUH7 402 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 PRMT5O14744 637 aaPredicted RBP16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 NDUFS3O75489 264 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 TRIM16O95361 564 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 SLC2A4P14672 509 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 BRAFP15056 766 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 GUCY2DQ02846 1103 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 THOC5Q13769 683 aaKnown RBP16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 FASTKD3Q14CZ7 662 aaKnown RBP16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 ZNF470Q6ECI4 717 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 DHRS13Q6UX07 377 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 UNC5AQ6ZN44 842 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 CENPUQ71F23 418 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 ANKMY2Q8IV38 441 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 LILRA3Q8N6C8 439 aaPredicted RBP16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 HM13Q8TCT9 377 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 MAPK15Q8TD08 544 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 CCDC74AQ96AQ1 378 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 TCF12Q99081 682 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms