RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.55■□□□□ 0.24
TRIM28-215ENST00000601150 MRM3Q9HC36 420 aaKnown RBP16.55■□□□□ 0.24
TRIM28-215ENST00000601150 KCNK4Q9NYG8 393 aa16.55■□□□□ 0.24
TRIM28-215ENST00000601150 SCHIP1Q9P0W5 487 aaPredicted RBP16.55■□□□□ 0.24
TRIM28-215ENST00000601150 DKK4Q9UBT3 224 aa16.55■□□□□ 0.24
TRIM28-215ENST00000601150 PCYOX1Q9UHG3 505 aa16.55■□□□□ 0.24
TRIM28-215ENST00000601150 ATXN7L1Q9ULK2 861 aaPredicted RBP16.55■□□□□ 0.24
TRIM28-215ENST00000601150 AK5Q9Y6K8 562 aa16.55■□□□□ 0.24
TRIM28-215ENST00000601150 KIF26BQ2KJY2 2108 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 IGHV1OR21-1A0A087WYE8 117 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 TMEM63AO94886 807 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 CPNE6O95741 557 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 CAPNS1P04632 268 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 MLNP12872 115 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 BRAFP15056 766 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 CD1CP29017 333 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 CASQ1P31415 396 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 DRG2P55039 364 aaKnown RBP16.54■□□□□ 0.24
TRIM28-215ENST00000601150 INHBCP55103 352 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 ETF1P62495 437 aaKnown RBP16.54■□□□□ 0.24
TRIM28-215ENST00000601150 UBE2IP63279 158 aaKnown RBP16.54■□□□□ 0.24
TRIM28-215ENST00000601150 CYP4F3Q08477 520 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 PTK6Q13882 451 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 NFE2L1Q14494 772 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 ARMC3Q5W041 872 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 METRNLQ641Q3 311 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 FAM83HQ6ZRV2 1179 aaPredicted RBP16.54■□□□□ 0.24
TRIM28-215ENST00000601150 B3GNT8Q7Z7M8 397 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 PIM3Q86V86 326 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 ZNF761Q86XN6 746 aaPredicted RBP16.54■□□□□ 0.24
TRIM28-215ENST00000601150 MCUQ8NE86 351 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 MDM1Q8TC05 714 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 RUNDC3BQ96NL0 473 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 TTC1Q99614 292 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 KIFC1Q9BW19 673 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 VPS37BQ9H9H4 285 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 XAB2Q9HCS7 855 aaKnown RBP16.54■□□□□ 0.24
TRIM28-215ENST00000601150 TREX1Q9NSU2 369 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 SYBUQ9NX95 663 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 ZNF624Q9P2J8 865 aaPredicted RBP16.54■□□□□ 0.24
TRIM28-215ENST00000601150 ASIC3Q9UHC3 531 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 FRYQ5TBA9 3013 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 IGF2RP11717 2491 aa16.54■□□□□ 0.24
TRIM28-215ENST00000601150 CCDC188H7C350 402 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 AP2A2O94973 939 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 VIPP01282 170 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 NMBRP28336 390 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 CCKBRP32239 447 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 SLC19A1P41440 591 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 NSG1P42857 185 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 PTGIRP43119 386 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 GPLD1P80108 840 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 SQSTM1Q13501 440 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 FASTKD1Q53R41 847 aaKnown RBP16.53■□□□□ 0.24
TRIM28-215ENST00000601150 PACS1Q6VY07 963 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 CERS6Q6ZMG9 384 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 SYDE1Q6ZW31 735 aaPredicted RBP16.53■□□□□ 0.24
TRIM28-215ENST00000601150 USP53Q70EK8 1073 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 CAND1Q86VP6 1230 aaKnown RBP16.53■□□□□ 0.24
TRIM28-215ENST00000601150 KLHL7Q8IXQ5 586 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 PPIL6Q8IXY8 311 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 CLDN19Q8N6F1 224 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 OR10G6Q8NH81 332 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 HM13Q8TCT9 377 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 CXorf40BQ96DE9 158 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 LIN37Q96GY3 246 aaPredicted RBP16.53■□□□□ 0.24
TRIM28-215ENST00000601150 AHCYL2Q96HN2 611 aaKnown RBP16.53■□□□□ 0.24
TRIM28-215ENST00000601150 DPYSL5Q9BPU6 564 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 CCM2Q9BSQ5 444 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 FOXP3Q9BZS1 431 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 STRADBQ9C0K7 418 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 POLR1BQ9H9Y6 1135 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 UCK1Q9HA47 277 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 RDH14Q9HBH5 336 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 EPB41L5Q9HCM4 733 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 POT1Q9NUX5 634 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 ACSL5Q9ULC5 683 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 SOX13Q9UN79 622 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 WDR37Q9Y2I8 494 aa16.53■□□□□ 0.24
TRIM28-215ENST00000601150 CCDC187A0A096LP49 1063 aa16.52■□□□□ 0.24
TRIM28-215ENST00000601150 C17orf113A0A1B0GUU1 675 aa16.52■□□□□ 0.24
TRIM28-215ENST00000601150 LILRA5A6NI73 299 aa16.52■□□□□ 0.24
TRIM28-215ENST00000601150 OR52A4PA6NMU1 304 aa16.52■□□□□ 0.24
TRIM28-215ENST00000601150 GOLGA8MH3BSY2 632 aa16.52■□□□□ 0.24
TRIM28-215ENST00000601150 QSOX1O00391 747 aa16.52■□□□□ 0.24
TRIM28-215ENST00000601150 AVILO75366 819 aa16.52■□□□□ 0.24
TRIM28-215ENST00000601150 MPOP05164 745 aa16.52■□□□□ 0.24
TRIM28-215ENST00000601150 GSTM1P09488 218 aa16.52■□□□□ 0.24
TRIM28-215ENST00000601150 PPARGP37231 505 aaPredicted RBP16.52■□□□□ 0.24
TRIM28-215ENST00000601150 LSSP48449 732 aa16.52■□□□□ 0.24
TRIM28-215ENST00000601150 PPM1FP49593 454 aaPredicted RBP16.52■□□□□ 0.24
TRIM28-215ENST00000601150 EPHA4P54764 986 aa16.52■□□□□ 0.24
TRIM28-215ENST00000601150 GABREP78334 506 aa16.52■□□□□ 0.24
TRIM28-215ENST00000601150 GSTM4Q03013 218 aa16.52■□□□□ 0.24
TRIM28-215ENST00000601150 ZFP36L1Q07352 338 aaKnown RBP16.52■□□□□ 0.24
TRIM28-215ENST00000601150 CLCA4Q14CN2 919 aa16.52■□□□□ 0.24
TRIM28-215ENST00000601150 ST3GAL2Q16842 350 aa16.52■□□□□ 0.24
TRIM28-215ENST00000601150 AARS2Q5JTZ9 985 aaKnown RBP16.52■□□□□ 0.24
TRIM28-215ENST00000601150 NKAIN2Q5VXU1 208 aa16.52■□□□□ 0.24
TRIM28-215ENST00000601150 NAT8LQ8N9F0 302 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms