RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 PDPRQ8NCN5 879 aa18.14■□□□□ 0.49
UPF1-210ENST00000600689 HGH1Q9BTY7 390 aa18.14■□□□□ 0.49
UPF1-210ENST00000600689 PRKD2Q9BZL6 878 aa18.14■□□□□ 0.49
UPF1-210ENST00000600689 C16orf96A6NNT2 1141 aa18.14■□□□□ 0.49
UPF1-210ENST00000600689 BTN3A1O00481 513 aa18.14■□□□□ 0.49
UPF1-210ENST00000600689 CTSHP09668 335 aa18.14■□□□□ 0.49
UPF1-210ENST00000600689 KCNE1P15382 129 aa18.14■□□□□ 0.49
UPF1-210ENST00000600689 SKIV2LQ15477 1246 aaKnown RBP18.14■□□□□ 0.49
UPF1-210ENST00000600689 C18orf21Q32NC0 220 aaPredicted RBP18.14■□□□□ 0.49
UPF1-210ENST00000600689 KANK2Q63ZY3 851 aa18.14■□□□□ 0.49
UPF1-210ENST00000600689 ERVK-18Q9QC07 812 aa18.14■□□□□ 0.49
UPF1-210ENST00000600689 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.14■□□□□ 0.49
UPF1-210ENST00000600689 DFNA5O60443 496 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 FADS2O95864 444 aaKnown RBP18.13■□□□□ 0.49
UPF1-210ENST00000600689 PNPLA4P41247 253 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 CPT1AP50416 773 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 CLCNKBP51801 687 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 ADPRMQ3LIE5 342 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 CATSPEREQ5SY80 951 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 TMEM199Q8N511 208 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 STON2Q8WXE9 905 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 MYLPFQ96A32 169 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 FKBP10Q96AY3 582 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 TMEM209Q96SK2 561 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 MROQ9BYG7 248 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 GPN2Q9H9Y4 310 aaPredicted RBP18.13■□□□□ 0.49
UPF1-210ENST00000600689 SPATA7Q9P0W8 599 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 CCDC162PA2VCL2 907 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 GLP2RO95838 553 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 WARSP23381 471 aaKnown RBP18.13■□□□□ 0.49
UPF1-210ENST00000600689 GSTM2P28161 218 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 FKBP1BP68106 108 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 RCAN2Q14206 197 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 SGO1Q5FBB7 561 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 XKR4Q5GH76 650 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 SIRPB2Q5JXA9 342 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 ANKS6Q68DC2 871 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 PM20D1Q6GTS8 502 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 KIAA0408Q6ZU52 694 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 COLGALT2Q8IYK4 626 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 SCAIQ8N9R8 606 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 OR52B6Q8NGF0 335 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 STARD8Q92502 1023 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 AP5M1Q9H0R1 490 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 EHD1Q9H4M9 534 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 SLC52A3Q9NQ40 469 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 GMIPQ9P107 970 aa18.13■□□□□ 0.49
UPF1-210ENST00000600689 EIF2B4Q9UI10 523 aaKnown RBP18.13■□□□□ 0.49
UPF1-210ENST00000600689 ECI2O75521 394 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 SOAT2O75908 522 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 HMBSP08397 361 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 ZNF37AP17032 561 aaPredicted RBP18.12■□□□□ 0.49
UPF1-210ENST00000600689 DNAJB2P25686 324 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 HTR6P50406 440 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 CRYBB1P53674 252 aaPredicted RBP18.12■□□□□ 0.49
UPF1-210ENST00000600689 LCP2Q13094 533 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 PHACTR4Q8IZ21 702 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 SCML4Q8N228 414 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 PSMG2Q969U7 264 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 GAD1Q99259 594 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 ADGRE2Q9UHX3 823 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 ACTL7AQ9Y615 435 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 CD3EAPO15446 510 aaKnown RBP18.12■□□□□ 0.49
UPF1-210ENST00000600689 DLGAP3O95886 979 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 G6PDP11413 515 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 RAB15P59190 212 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 RPS3AP61247 264 aaKnown RBP18.12■□□□□ 0.49
UPF1-210ENST00000600689 PURAQ00577 322 aaKnown RBP18.12■□□□□ 0.49
UPF1-210ENST00000600689 C3orf58Q8NDZ4 430 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 CLHC1Q8NHS4 586 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 PNPT1Q8TCS8 783 aaKnown RBP18.12■□□□□ 0.49
UPF1-210ENST00000600689 MCOLN3Q8TDD5 553 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 FAM162AQ96A26 154 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 HMCESQ96FZ2 354 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 DACH2Q96NX9 599 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 TSGA13Q96PP4 275 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 LRRC3Q9BY71 257 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 RIBC2Q9H4K1 309 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 AGO3Q9H9G7 860 aaKnown RBP18.12■□□□□ 0.49
UPF1-210ENST00000600689 SP110Q9HB58 689 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 PALMDQ9NP74 551 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 ZMYM5Q9UJ78 669 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 H0YAE9 185 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 PRKD3O94806 890 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 ANXA6P08133 673 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 CDH1P12830 882 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 DNAJB1P25685 340 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 GALNT1Q10472 559 aaPredicted RBP18.12■□□□□ 0.49
UPF1-210ENST00000600689 CTF1Q16619 201 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 SMN1Q16637 294 aaKnown RBP18.12■□□□□ 0.49
UPF1-210ENST00000600689 TMEM179BQ7Z7N9 219 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 BPIFB1Q8TDL5 484 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 MBOAT4Q96T53 435 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 NDEL1Q9GZM8 345 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 SMOC2Q9H3U7 446 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 AIG1Q9NVV5 245 aa18.12■□□□□ 0.49
UPF1-210ENST00000600689 DNMT3BQ9UBC3 853 aaKnown RBP18.12■□□□□ 0.49
UPF1-210ENST00000600689 POLR3HQ9Y535 204 aaPredicted RBP18.12■□□□□ 0.49
UPF1-210ENST00000600689 ARVCFO00192 962 aa18.11■□□□□ 0.49
UPF1-210ENST00000600689 SLC1A7O00341 560 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms