RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 MGAT5Q09328 741 aa16.29■□□□□ 0.2
SHKBP1-219ENST00000599575 ILKQ13418 452 aa16.29■□□□□ 0.2
SHKBP1-219ENST00000599575 SEMA3AQ14563 771 aa16.29■□□□□ 0.2
SHKBP1-219ENST00000599575 RSPO4Q2I0M5 234 aaPredicted RBP16.29■□□□□ 0.2
SHKBP1-219ENST00000599575 PROX2Q3B8N5 592 aa16.29■□□□□ 0.2
SHKBP1-219ENST00000599575 HSP90AA5PQ58FG0 334 aa16.29■□□□□ 0.2
SHKBP1-219ENST00000599575 CRTC3Q6UUV7 619 aa16.29■□□□□ 0.2
SHKBP1-219ENST00000599575 ANKMY2Q8IV38 441 aa16.29■□□□□ 0.2
SHKBP1-219ENST00000599575 EID2Q8N6I1 236 aa16.29■□□□□ 0.2
SHKBP1-219ENST00000599575 HM13Q8TCT9 377 aa16.29■□□□□ 0.2
SHKBP1-219ENST00000599575 LPGAT1Q92604 370 aa16.29■□□□□ 0.2
SHKBP1-219ENST00000599575 CDKL2Q92772 493 aa16.29■□□□□ 0.2
SHKBP1-219ENST00000599575 CFAP36Q96G28 342 aa16.29■□□□□ 0.2
SHKBP1-219ENST00000599575 PANX3Q96QZ0 392 aa16.29■□□□□ 0.2
SHKBP1-219ENST00000599575 RHOXF2Q9BQY4 288 aa16.29■□□□□ 0.2
SHKBP1-219ENST00000599575 WDR83Q9BRX9 315 aaKnown RBP16.29■□□□□ 0.2
SHKBP1-219ENST00000599575 TRIM56Q9BRZ2 755 aaKnown RBP16.29■□□□□ 0.2
SHKBP1-219ENST00000599575 P2RY12Q9H244 342 aa16.29■□□□□ 0.2
SHKBP1-219ENST00000599575 DPEP2Q9H4A9 486 aa16.29■□□□□ 0.2
SHKBP1-219ENST00000599575 KLC4Q9NSK0 619 aa16.29■□□□□ 0.2
SHKBP1-219ENST00000599575 FBXO5Q9UKT4 447 aa16.29■□□□□ 0.2
SHKBP1-219ENST00000599575 CORO1CQ9ULV4 474 aaPredicted RBP16.29■□□□□ 0.2
SHKBP1-219ENST00000599575 CEP250Q9BV73 2442 aa16.29■□□□□ 0.2
SHKBP1-219ENST00000599575 DMXL1Q9Y485 3027 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 KIR2DS5A0A0G2JLQ3 304 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 A0A0G2JNG1 304 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 KIR2DS3K7RE56 304 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 TRIM38O00635 465 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 LIN7AO14910 233 aaPredicted RBP16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 FFAR2O15552 330 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 ZW10O43264 779 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 SIGLEC6O43699 453 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 S1PR4O95977 384 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 TUBBP07437 444 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 PRSS56P0CW18 603 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 CKMT1AP12532 417 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 F3P13726 295 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 CKMT2P17540 419 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 MCM3P25205 808 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 LEPRP48357 1165 aaKnown RBP16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 CARSP49589 748 aaKnown RBP16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 PUM1Q14671 1186 aaKnown RBP eCLIP16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 KIR2DS5Q14953 304 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 FASTKD3Q14CZ7 662 aaKnown RBP16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 DEFB133Q30KQ1 61 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 TEX35Q5T0J7 233 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 METRNLQ641Q3 311 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 SLC30A9Q6PML9 568 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 ABRAXAS1Q6UWZ7 409 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 C3orf62Q6ZUJ4 267 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 SLC26A11Q86WA9 606 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 CCDC25Q86WR0 208 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 C17orf82Q86X59 251 aaPredicted RBP16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 CNPY4Q8N129 248 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 CLDN19Q8N6F1 224 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 C2CD4AQ8NCU7 369 aaPredicted RBP16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 GPR156Q8NFN8 814 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 NAT6Q93015 286 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 PLAC1Q9HBJ0 212 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 PPANQ9NQ55 473 aaKnown RBP16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 ZFATQ9P243 1243 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 KLHL42Q9P2K6 505 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 BTBD3Q9Y2F9 522 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 PRKAB1Q9Y478 270 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 CFAP54Q96N23 3096 aa16.28■□□□□ 0.2
SHKBP1-219ENST00000599575 COL5A1P20908 1838 aaPredicted RBP16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 GOLGA8KD6RF30 607 aa16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 GOLGA8TH3BQL2 631 aa16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 OR1I1O60431 355 aa16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 GP1BAP07359 652 aa16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 PNLIPP16233 465 aa16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 AK4P27144 223 aaPredicted RBP16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 ECHS1P30084 290 aa16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 STX2P32856 288 aa16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 PHBP35232 272 aa16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 HALP42357 657 aa16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 NAB1Q13506 487 aa16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 NR0B2Q15466 257 aa16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 TRIP6Q15654 476 aaKnown RBP16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 HP1BP3Q5SSJ5 553 aaPredicted RBP16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 PTRHD1Q6GMV3 140 aaKnown RBP16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 DET1Q7L5Y6 550 aa16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 CCL4L1Q8NHW4 92 aa16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 ZDHHC1Q8WTX9 485 aa16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 UBXN4Q92575 508 aa16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 CNDP2Q96KP4 475 aaKnown RBP16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 APOLD1Q96LR9 279 aa16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 CCDC68Q9H2F9 335 aa16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 STN1Q9H668 368 aaKnown RBP16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 SPATS2LQ9NUQ6 558 aaKnown RBP16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 SLC23A2Q9UGH3 650 aa16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 KCNK6Q9Y257 313 aa16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 PCDHGA1Q9Y5H4 931 aa16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 PCYT1BQ9Y5K3 369 aaPredicted RBP16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 ST14Q9Y5Y6 855 aa16.27■□□□□ 0.2
SHKBP1-219ENST00000599575 LRP4O75096 1905 aa16.26■□□□□ 0.19
SHKBP1-219ENST00000599575 MYLKQ15746 1914 aa16.26■□□□□ 0.19
SHKBP1-219ENST00000599575 A6NCN8 305 aa16.26■□□□□ 0.19
SHKBP1-219ENST00000599575 NUDT21O43809 227 aaKnown RBP16.26■□□□□ 0.19
SHKBP1-219ENST00000599575 CELA2BP08218 269 aaPredicted RBP16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms