RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 BHMG1C9JSJ3 638 aaPredicted RBP13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 KIF2AO00139 706 aaPredicted RBP13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 F3P13726 295 aa13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 GLB1P16278 677 aa13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 ELK3P41970 407 aa13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 RPIAP49247 311 aa13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 OR1D5P58170 312 aa13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 CCL7P80098 99 aa13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 CKAP4Q07065 602 aaKnown RBP13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 ILKQ13418 452 aa13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 ITIH4Q14624 930 aa13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 FASTKD3Q14CZ7 662 aaKnown RBP13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 CDCP2Q5VXM1 449 aa13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 METRNLQ641Q3 311 aa13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 ABRAXAS1Q6UWZ7 409 aa13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 ZDHHC24Q6UX98 284 aa13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 PACS1Q6VY07 963 aa13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 CENPUQ71F23 418 aa13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 TMPRSS7Q7RTY8 843 aa13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 SPDYE1Q8NFV5 336 aaPredicted RBP13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 OR2L2Q8NH16 312 aa13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 KIF18AQ8NI77 898 aa13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 LKAAEAR1Q8TD35 194 aa13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 HEXDCQ8WVB3 486 aa13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 STAMBPL1Q96FJ0 436 aa13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 ZNF514Q96K75 400 aaPredicted RBP13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 EBNA1BP2Q99848 306 aaKnown RBP13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 NCKIPSDQ9NZQ3 722 aa13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 PSMD13Q9UNM6 376 aa13.95□□□□□ -0.18
SHKBP1-217ENST00000598558 OR52A4PA6NMU1 304 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 NTN3O00634 580 aaPredicted RBP13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 NUDT21O43809 227 aaKnown RBP13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 POLBP06746 335 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 GP1BAP07359 652 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 RALBP11234 206 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 IDSP22304 550 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 PDHA2P29803 388 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 NSG1P42857 185 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 UBE2IP63279 158 aaKnown RBP13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 HES3Q5TGS1 186 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 AGAP9Q5VTM2 703 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 NEPROQ6NW34 567 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 WASH2PQ6VEQ5 465 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 TMPRSS9Q7Z410 1059 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 ZNF438Q7Z4V0 828 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 DENND6AQ8IWF6 608 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 CFAP206Q8IYR0 622 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 MMGT1Q8N4V1 131 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 LRRN4CLQ8ND94 238 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 GPR150Q8NGU9 434 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 MAPK15Q8TD08 544 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 INSM2Q96T92 566 aaPredicted RBP13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 P2RY12Q9H244 342 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 WASH6PQ9NQA3 447 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 SAMD15Q9P1V8 674 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 WHRNQ9P202 907 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 DMGDHQ9UI17 866 aaKnown RBP13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 TEX264Q9Y6I9 313 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 FAM169AQ9Y6X4 670 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 NCOR2Q9Y618 2525 aa13.94□□□□□ -0.18
SHKBP1-217ENST00000598558 ESYT3A0FGR9 886 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 FAM221BA6H8Z2 402 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 PDZK1P1A8MUH7 402 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 CFAP99D6REC4 459 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 E7ESA3 106 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 KCNJ13O60928 360 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 USP1O94782 785 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 AP2A2O94973 939 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 TRIM16O95361 564 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 S1PR4O95977 384 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 MT-CO3P00414 261 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 ITGB6P18564 788 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 E2F1Q01094 437 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 CFHR1Q03591 330 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 CBLBQ13191 982 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 CRYMQ14894 314 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 NR1D2Q14995 579 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 RPE65Q16518 533 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 TYSND1Q2T9J0 566 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 LYPLAL1Q5VWZ2 237 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 NKAIN2Q5VXU1 208 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 ARMC3Q5W041 872 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 CERS6Q6ZMG9 384 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 SPRED1Q7Z699 444 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 ANKMY2Q8IV38 441 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 KRT222Q8N1A0 295 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 NAT6Q93015 286 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 ART4Q93070 314 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 BIRC8Q96P09 236 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 CCM2Q9BSQ5 444 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 WWP1Q9H0M0 922 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 GALPQ9UBC7 116 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 CPNE7Q9UBL6 633 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 ATXN7L1Q9ULK2 861 aaPredicted RBP13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 CHMP2BQ9UQN3 213 aa13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 CFAP20Q9Y6A4 193 aaKnown RBP13.93□□□□□ -0.18
SHKBP1-217ENST00000598558 C17orf113A0A1B0GUU1 675 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 RPLP0P05388 317 aaKnown RBP13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 ERVK-10P10266 1014 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms