RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 INTS12Q96CB8 462 aaKnown RBP4.89□□□□□ -1.63
SMAD4-216ENST00000593223 METTL2AQ96IZ6 378 aaKnown RBP4.89□□□□□ -1.63
SMAD4-216ENST00000593223 ADGRG7Q96K78 797 aa4.89□□□□□ -1.63
SMAD4-216ENST00000593223 C3orf30Q96M34 536 aa4.89□□□□□ -1.63
SMAD4-216ENST00000593223 C7orf26Q96N11 449 aa4.89□□□□□ -1.63
SMAD4-216ENST00000593223 JAKMIP1Q96N16 626 aaKnown RBP4.89□□□□□ -1.63
SMAD4-216ENST00000593223 TSGA13Q96PP4 275 aa4.89□□□□□ -1.63
SMAD4-216ENST00000593223 FAM110AQ9BQ89 295 aa4.89□□□□□ -1.63
SMAD4-216ENST00000593223 SLF1Q9BQI6 1058 aa4.89□□□□□ -1.63
SMAD4-216ENST00000593223 C2orf40Q9H1Z8 148 aa4.89□□□□□ -1.63
SMAD4-216ENST00000593223 ESRP2Q9H6T0 727 aaKnown RBP4.89□□□□□ -1.63
SMAD4-216ENST00000593223 C17orf75Q9HAS0 396 aa4.89□□□□□ -1.63
SMAD4-216ENST00000593223 HINT3Q9NQE9 182 aaKnown RBP4.89□□□□□ -1.63
SMAD4-216ENST00000593223 RBM28Q9NW13 759 aaKnown RBP4.89□□□□□ -1.63
SMAD4-216ENST00000593223 HPF1Q9NWY4 346 aa4.89□□□□□ -1.63
SMAD4-216ENST00000593223 HOXC10Q9NYD6 342 aa4.89□□□□□ -1.63
SMAD4-216ENST00000593223 AASSQ9UDR5 926 aa4.89□□□□□ -1.63
SMAD4-216ENST00000593223 PCSK1NQ9UHG2 260 aa4.89□□□□□ -1.63
SMAD4-216ENST00000593223 TTC7AQ9ULT0 858 aaPredicted RBP4.89□□□□□ -1.63
SMAD4-216ENST00000593223 PLSCR5A0PG75 271 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 PGPEP1LA6NFU8 196 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 ERICH4A6NGS2 130 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 BTBD18B2RXH4 712 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 SOCS6O14544 535 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 EEF2P13639 858 aaKnown RBP4.88□□□□□ -1.63
SMAD4-216ENST00000593223 KRT13P13646 458 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 IL7RP16871 459 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 HOXB6P17509 224 aaKnown RBP4.88□□□□□ -1.63
SMAD4-216ENST00000593223 ICAM3P32942 547 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 METAP2P50579 478 aaKnown RBP eCLIP4.88□□□□□ -1.63
SMAD4-216ENST00000593223 LIMK1P53667 647 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 RPS3AP61247 264 aaKnown RBP4.88□□□□□ -1.63
SMAD4-216ENST00000593223 KIF5AQ12840 1032 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 GRSF1Q12849 480 aaKnown RBP eCLIP4.88□□□□□ -1.63
SMAD4-216ENST00000593223 MRPL28Q13084 256 aaKnown RBP4.88□□□□□ -1.63
SMAD4-216ENST00000593223 CUL4AQ13619 759 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 CTF1Q16619 201 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 KIF19Q2TAC6 998 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 USP41Q3LFD5 358 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 ATP13A5Q4VNC0 1218 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 SETMARQ53H47 684 aaPredicted RBP4.88□□□□□ -1.63
SMAD4-216ENST00000593223 PAPPA-AS1Q5QFB9 102 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 GGNBP1Q5YKI7 109 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 HIST2H2BCQ6DN03 193 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 HIST2H2BDQ6DRA6 164 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 CRELD2Q6UXH1 353 aaPredicted RBP4.88□□□□□ -1.63
SMAD4-216ENST00000593223 MFSD6Q6ZSS7 791 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 SMIM5Q71RC9 77 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 CCDC91Q7Z6B0 441 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 WDR63Q8IWG1 891 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 SPATA6LQ8N4H0 392 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 MNS1Q8NEH6 495 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 LILRB1Q8NHL6 650 aaPredicted RBP4.88□□□□□ -1.63
SMAD4-216ENST00000593223 TAF4BQ92750 862 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 FAM149B1Q96BN6 582 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 SCMH1Q96GD3 660 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 SLC41A2Q96JW4 573 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 CNDP2Q96KP4 475 aaKnown RBP4.88□□□□□ -1.63
SMAD4-216ENST00000593223 FAM210AQ96ND0 272 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 TMEM47Q9BQJ4 181 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 HAUS8Q9BT25 410 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 IL25Q9H293 177 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 SUDS3Q9H7L9 328 aaPredicted RBP4.88□□□□□ -1.63
SMAD4-216ENST00000593223 DLGAP2Q9P1A6 1054 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 LIMA1Q9UHB6 759 aaKnown RBP4.88□□□□□ -1.63
SMAD4-216ENST00000593223 DUSP12Q9UNI6 340 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 PARP4Q9UKK3 1724 aaKnown RBP4.88□□□□□ -1.63
SMAD4-216ENST00000593223 PLEKHG2Q9H7P9 1386 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 NAIPQ13075 1403 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 CASKIN1Q8WXD9 1431 aa4.88□□□□□ -1.63
SMAD4-216ENST00000593223 CDC42BPGQ6DT37 1551 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 DENND3A2RUS2 1198 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 CPED1A4D0V7 1026 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 CCDC69A6NI79 296 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 TGFB1I1O43294 461 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 HNRNPCL1O60812 293 aaKnown RBP4.87□□□□□ -1.63
SMAD4-216ENST00000593223 TMEM63AO94886 807 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 NKX2-2O95096 273 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 CCNDBP1O95273 360 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 CLDN14O95500 239 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 MT-ND3P03897 115 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 CLEC3BP05452 202 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 SFTPCP11686 197 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 ZNF182P17025 639 aaPredicted RBP4.87□□□□□ -1.63
SMAD4-216ENST00000593223 DDX5P17844 614 aaKnown RBP4.87□□□□□ -1.63
SMAD4-216ENST00000593223 NFKBIAP25963 317 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 HSPA4P34932 840 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 BSGP35613 385 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 RGS2P41220 211 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 HNF4AP41235 474 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 CD86P42081 329 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 COMPP49747 757 aaPredicted RBP4.87□□□□□ -1.63
SMAD4-216ENST00000593223 RAD23BP54727 409 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 RRP1P56182 461 aaKnown RBP4.87□□□□□ -1.63
SMAD4-216ENST00000593223 ECT2LQ008S8 904 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 SNTA1Q13424 505 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 OLIG2Q13516 323 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 KRTCAP3Q53RY4 240 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 C6orf141Q5SZD1 244 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 SIGIRRQ6IA17 410 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms