RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 HADHAP40939 763 aa5.96□□□□□ -1.46
SS18-214ENST00000580003 SPOCK1Q08629 439 aa5.96□□□□□ -1.46
SS18-214ENST00000580003 KIR2DS3Q14952 304 aa5.96□□□□□ -1.46
SS18-214ENST00000580003 DUOXA1Q1HG43 343 aa5.96□□□□□ -1.46
SS18-214ENST00000580003 NDUFAF5Q5TEU4 345 aa5.96□□□□□ -1.46
SS18-214ENST00000580003 SLC35E4Q6ICL7 350 aa5.96□□□□□ -1.46
SS18-214ENST00000580003 CLEC17AQ6ZS10 378 aa5.96□□□□□ -1.46
SS18-214ENST00000580003 GALNT5Q7Z7M9 940 aa5.96□□□□□ -1.46
SS18-214ENST00000580003 GALNT13Q8IUC8 556 aa5.96□□□□□ -1.46
SS18-214ENST00000580003 CEP97Q8IW35 865 aa5.96□□□□□ -1.46
SS18-214ENST00000580003 SCYL3Q8IZE3 742 aa5.96□□□□□ -1.46
SS18-214ENST00000580003 DACH2Q96NX9 599 aa5.96□□□□□ -1.46
SS18-214ENST00000580003 SRSF8Q9BRL6 282 aaKnown RBP5.96□□□□□ -1.46
SS18-214ENST00000580003 PNMA2Q9UL42 364 aa5.96□□□□□ -1.46
SS18-214ENST00000580003 OR2M5A3KFT3 312 aa5.95□□□□□ -1.46
SS18-214ENST00000580003 C5orf60A6NFR6 353 aa5.95□□□□□ -1.46
SS18-214ENST00000580003 PLK4O00444 970 aa5.95□□□□□ -1.46
SS18-214ENST00000580003 VILLO15195 856 aa5.95□□□□□ -1.46
SS18-214ENST00000580003 WISP2O76076 250 aa5.95□□□□□ -1.46
SS18-214ENST00000580003 GARSP41250 739 aaKnown RBP5.95□□□□□ -1.46
SS18-214ENST00000580003 PPP2R2BQ00005 443 aa5.95□□□□□ -1.46
SS18-214ENST00000580003 MBTD1Q05BQ5 628 aa5.95□□□□□ -1.46
SS18-214ENST00000580003 KCNC3Q14003 757 aa5.95□□□□□ -1.46
SS18-214ENST00000580003 SFMBT2Q5VUG0 894 aa5.95□□□□□ -1.46
SS18-214ENST00000580003 CEACAM20Q6UY09 585 aa5.95□□□□□ -1.46
SS18-214ENST00000580003 FOXP4Q8IVH2 680 aaPredicted RBP5.95□□□□□ -1.46
SS18-214ENST00000580003 SMPDL3BQ92485 455 aa5.95□□□□□ -1.46
SS18-214ENST00000580003 TM9SF4Q92544 642 aa5.95□□□□□ -1.46
SS18-214ENST00000580003 HGH1Q9BTY7 390 aa5.95□□□□□ -1.46
SS18-214ENST00000580003 SLC38A7Q9NVC3 462 aa5.95□□□□□ -1.46
SS18-214ENST00000580003 PAG1Q9NWQ8 432 aa5.95□□□□□ -1.46
SS18-214ENST00000580003 ERRFI1Q9UJM3 462 aaPredicted RBP5.95□□□□□ -1.46
SS18-214ENST00000580003 EXO1Q9UQ84 846 aaKnown RBP5.95□□□□□ -1.46
SS18-214ENST00000580003 PMS2P5A8MQ11 134 aa5.94□□□□□ -1.46
SS18-214ENST00000580003 PRSS47A8MTI9 375 aa5.94□□□□□ -1.46
SS18-214ENST00000580003 INHBAP08476 426 aa5.94□□□□□ -1.46
SS18-214ENST00000580003 PSMB10P40306 273 aa5.94□□□□□ -1.46
SS18-214ENST00000580003 GLIPR1P48060 266 aa5.94□□□□□ -1.46
SS18-214ENST00000580003 NR2C2P49116 596 aa5.94□□□□□ -1.46
SS18-214ENST00000580003 GAGE2BQ13066 116 aa5.94□□□□□ -1.46
SS18-214ENST00000580003 RBM39Q14498 530 aaKnown RBP5.94□□□□□ -1.46
SS18-214ENST00000580003 GAGE2EQ4V326 116 aa5.94□□□□□ -1.46
SS18-214ENST00000580003 GAGE2AQ6NT46 116 aa5.94□□□□□ -1.46
SS18-214ENST00000580003 ZNF449Q6P9G9 518 aa5.94□□□□□ -1.46
SS18-214ENST00000580003 DGLUCYQ7Z3D6 616 aa5.94□□□□□ -1.46
SS18-214ENST00000580003 PTOV1Q86YD1 416 aa5.94□□□□□ -1.46
SS18-214ENST00000580003 MCEMP1Q8IX19 187 aa5.94□□□□□ -1.46
SS18-214ENST00000580003 STPG4Q8N801 248 aa5.94□□□□□ -1.46
SS18-214ENST00000580003 OR10V1Q8NGI7 309 aa5.94□□□□□ -1.46
SS18-214ENST00000580003 SAT2Q96F10 170 aaPredicted RBP5.94□□□□□ -1.46
SS18-214ENST00000580003 PRMT6Q96LA8 375 aaPredicted RBP5.94□□□□□ -1.46
SS18-214ENST00000580003 C17orf77Q96MU5 243 aa5.94□□□□□ -1.46
SS18-214ENST00000580003 TREX2Q9BQ50 279 aaPredicted RBP5.94□□□□□ -1.46
SS18-214ENST00000580003 SLX1AQ9BQ83 275 aa5.94□□□□□ -1.46
SS18-214ENST00000580003 MAK16Q9BXY0 300 aaKnown RBP5.94□□□□□ -1.46
SS18-214ENST00000580003 DENND2DQ9H6A0 471 aaPredicted RBP5.94□□□□□ -1.46
SS18-214ENST00000580003 APOBEC3GQ9HC16 384 aaKnown RBP5.94□□□□□ -1.46
SS18-214ENST00000580003 ZBTB20Q9HC78 741 aaPredicted RBP5.94□□□□□ -1.46
SS18-214ENST00000580003 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.94□□□□□ -1.46
SS18-214ENST00000580003 GAGE2DQ9UEU5 116 aa5.94□□□□□ -1.46
SS18-214ENST00000580003 LRRC72A6NJI9 287 aa5.93□□□□□ -1.46
SS18-214ENST00000580003 NR3C1P04150 777 aa5.93□□□□□ -1.46
SS18-214ENST00000580003 SELLP14151 372 aa5.93□□□□□ -1.46
SS18-214ENST00000580003 DCTP40126 519 aa5.93□□□□□ -1.46
SS18-214ENST00000580003 MRPS5P82675 430 aaKnown RBP5.93□□□□□ -1.46
SS18-214ENST00000580003 KLHDC8BQ8IXV7 354 aa5.93□□□□□ -1.46
SS18-214ENST00000580003 HRH4Q9H3N8 390 aa5.93□□□□□ -1.46
SS18-214ENST00000580003 BICC1Q9H694 974 aaKnown RBP5.93□□□□□ -1.46
SS18-214ENST00000580003 DNAJB4Q9UDY4 337 aa5.93□□□□□ -1.46
SS18-214ENST00000580003 ZNF215Q9UL58 517 aaPredicted RBP5.93□□□□□ -1.46
SS18-214ENST00000580003 GAB2Q9UQC2 676 aa5.93□□□□□ -1.46
SS18-214ENST00000580003 PCDHGA5Q9Y5G8 931 aa5.93□□□□□ -1.46
SS18-214ENST00000580003 WDR81Q562E7 1941 aa5.92□□□□□ -1.46
SS18-214ENST00000580003 NDUFS4O43181 175 aa5.92□□□□□ -1.46
SS18-214ENST00000580003 DOK2O60496 412 aa5.92□□□□□ -1.46
SS18-214ENST00000580003 MSH3P20585 1137 aa5.92□□□□□ -1.46
SS18-214ENST00000580003 MMP15P51511 669 aa5.92□□□□□ -1.46
SS18-214ENST00000580003 CLNS1AP54105 237 aaKnown RBP5.92□□□□□ -1.46
SS18-214ENST00000580003 MFAP4P55083 255 aa5.92□□□□□ -1.46
SS18-214ENST00000580003 WDR38Q5JTN6 314 aa5.92□□□□□ -1.46
SS18-214ENST00000580003 ZNF473Q8WTR7 871 aaKnown RBP5.92□□□□□ -1.46
SS18-214ENST00000580003 SEMA4DQ92854 862 aa5.92□□□□□ -1.46
SS18-214ENST00000580003 BLOC1S4Q9NUP1 217 aa5.92□□□□□ -1.46
SS18-214ENST00000580003 AMACRQ9UHK6 382 aa5.92□□□□□ -1.46
SS18-214ENST00000580003 FSD2A1L4K1 749 aa5.91□□□□□ -1.46
SS18-214ENST00000580003 SMIM1B2RUZ4 78 aa5.91□□□□□ -1.46
SS18-214ENST00000580003 B4DLN1 442 aa5.91□□□□□ -1.46
SS18-214ENST00000580003 PCDH7O60245 1069 aa5.91□□□□□ -1.46
SS18-214ENST00000580003 MITFO75030 526 aaPredicted RBP5.91□□□□□ -1.46
SS18-214ENST00000580003 RSL1D1O76021 490 aaKnown RBP5.91□□□□□ -1.46
SS18-214ENST00000580003 AMBPP02760 352 aa5.91□□□□□ -1.46
SS18-214ENST00000580003 NMBRP28336 390 aa5.91□□□□□ -1.46
SS18-214ENST00000580003 MRPL12P52815 198 aaKnown RBP5.91□□□□□ -1.46
SS18-214ENST00000580003 DRG2P55039 364 aaKnown RBP5.91□□□□□ -1.46
SS18-214ENST00000580003 SNRPEP62304 92 aaKnown RBP5.91□□□□□ -1.46
SS18-214ENST00000580003 MC1RQ01726 317 aa5.91□□□□□ -1.46
SS18-214ENST00000580003 KRT33BQ14525 404 aa5.91□□□□□ -1.46
SS18-214ENST00000580003 IRF3Q14653 427 aa5.91□□□□□ -1.46
SS18-214ENST00000580003 TECRLQ5HYJ1 363 aa5.91□□□□□ -1.46
SS18-214ENST00000580003 FAM109BQ6ICB4 259 aaPredicted RBP5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms