RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 DNAAF2Q9NVR5 837 aaKnown RBP8.44□□□□□ -1.06
NUP88-211ENST00000575976 TRNAU1APQ9NX07 287 aaKnown RBP8.44□□□□□ -1.06
NUP88-211ENST00000575976 SPASTQ9UBP0 616 aa8.44□□□□□ -1.06
NUP88-211ENST00000575976 SLC23A2Q9UGH3 650 aa8.44□□□□□ -1.06
NUP88-211ENST00000575976 GPR34Q9UPC5 381 aa8.44□□□□□ -1.06
NUP88-211ENST00000575976 CRYL1Q9Y2S2 319 aa8.44□□□□□ -1.06
NUP88-211ENST00000575976 ST14Q9Y5Y6 855 aa8.44□□□□□ -1.06
NUP88-211ENST00000575976 ZFYVE26Q68DK2 2539 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 FAM159BA6NKW6 160 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 C4orf47A7E2U8 309 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 IQCF5A8MTL0 148 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 CXorf49A8MYA2 514 aaPredicted RBP8.43□□□□□ -1.06
NUP88-211ENST00000575976 PRMT5O14744 637 aaPredicted RBP8.43□□□□□ -1.06
NUP88-211ENST00000575976 PFDN6O15212 129 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 YKT6O15498 198 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 AQP9O43315 295 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 FOXD2O60548 495 aaPredicted RBP8.43□□□□□ -1.06
NUP88-211ENST00000575976 SPAG6O75602 509 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 AP2A2O94973 939 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 ACSL3O95573 720 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 AHSGP02765 367 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 OR56A5P0C7T3 313 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 ZNF883P0CG24 379 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 GIMD1P0DJR0 217 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 HOXB3P14651 431 aaPredicted RBP8.43□□□□□ -1.06
NUP88-211ENST00000575976 ITGB6P18564 788 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 GABRB3P28472 473 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 PBLDP30039 288 aaPredicted RBP8.43□□□□□ -1.06
NUP88-211ENST00000575976 FMO4P31512 558 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 PI4KAP42356 2102 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 LEPRP48357 1165 aaKnown RBP8.43□□□□□ -1.06
NUP88-211ENST00000575976 PRLHRP49683 370 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 PMS2P54278 862 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 EIF3BP55884 814 aaKnown RBP8.43□□□□□ -1.06
NUP88-211ENST00000575976 CTBSQ01459 385 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 ELOCQ15369 112 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 INSCQ1MX18 579 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 UAP1L1Q3KQV9 507 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 CTSL3PQ5NE16 218 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 RNF187Q5TA31 235 aaPredicted RBP8.43□□□□□ -1.06
NUP88-211ENST00000575976 CNSTQ6PJW8 725 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 TAF8Q7Z7C8 310 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 KRT222Q8N1A0 295 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 GABPB2Q8TAK5 448 aaPredicted RBP8.43□□□□□ -1.06
NUP88-211ENST00000575976 UHMK1Q8TAS1 419 aaKnown RBP8.43□□□□□ -1.06
NUP88-211ENST00000575976 LKAAEAR1Q8TD35 194 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 GPBAR1Q8TDU6 330 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 SCG3Q8WXD2 468 aaKnown RBP8.43□□□□□ -1.06
NUP88-211ENST00000575976 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.43□□□□□ -1.06
NUP88-211ENST00000575976 ZNF514Q96K75 400 aaPredicted RBP8.43□□□□□ -1.06
NUP88-211ENST00000575976 LINC00615Q96LM1 132 aaPredicted RBP8.43□□□□□ -1.06
NUP88-211ENST00000575976 TMEM9BQ9NQ34 198 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 KLC4Q9NSK0 619 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 INTS10Q9NVR2 710 aaKnown RBP8.43□□□□□ -1.06
NUP88-211ENST00000575976 ZFATQ9P243 1243 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 GULP1Q9UBP9 304 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 RABGEF1Q9UJ41 708 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 RAB21Q9UL25 225 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 KCNK6Q9Y257 313 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 DNAJC16Q9Y2G8 782 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 DNMT3AQ9Y6K1 912 aaPredicted RBP8.43□□□□□ -1.06
NUP88-211ENST00000575976 CSNK1G3Q9Y6M4 447 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 OTOGLQ3ZCN5 2332 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 TMEM131Q92545 1883 aa8.43□□□□□ -1.06
NUP88-211ENST00000575976 RALGAPA1Q6GYQ0 2036 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.42□□□□□ -1.06
NUP88-211ENST00000575976 MGAT4DA6NG13 374 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 QSOX1O00391 747 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 YY2O15391 372 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 FFAR2O15552 330 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 RIPK2O43353 540 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 PCDHGA12O60330 932 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 NIPSNAP2O75323 286 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 FTH1P02794 183 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 ANXA6P08133 673 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 CD59P13987 128 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 PKMP14618 531 aaKnown RBP8.42□□□□□ -1.06
NUP88-211ENST00000575976 RPS3P23396 243 aaKnown RBP eCLIP8.42□□□□□ -1.06
NUP88-211ENST00000575976 MCM3P25205 808 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 STX2P32856 288 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 PHBP35232 272 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 ACTR1BP42025 376 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 ABCG1P45844 678 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 CD151P48509 253 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 CLCNKAP51800 687 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 ADARP55265 1226 aaKnown RBP8.42□□□□□ -1.06
NUP88-211ENST00000575976 ACTR1AP61163 376 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 ILF3Q12906 894 aaKnown RBP eCLIP8.42□□□□□ -1.06
NUP88-211ENST00000575976 LRP8Q14114 963 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 SUZ12Q15022 739 aaKnown RBP8.42□□□□□ -1.06
NUP88-211ENST00000575976 EFTUD2Q15029 972 aaKnown RBP eCLIP8.42□□□□□ -1.06
NUP88-211ENST00000575976 DEFB133Q30KQ1 61 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 KBTBD12Q3ZCT8 623 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 PPM1JQ5JR12 505 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 STPG1Q5TH74 334 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 PTRHD1Q6GMV3 140 aaKnown RBP8.42□□□□□ -1.06
NUP88-211ENST00000575976 ZNF549Q6P9A3 640 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 ZNF449Q6P9G9 518 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 SLC30A9Q6PML9 568 aa8.42□□□□□ -1.06
NUP88-211ENST00000575976 XKR5Q6UX68 686 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms