RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 IL27RAQ6UWB1 636 aa10.64□□□□□ -0.71
CCDC40-207ENST00000572253 USP50Q70EL3 339 aaPredicted RBP10.64□□□□□ -0.71
CCDC40-207ENST00000572253 MIB1Q86YT6 1006 aa10.64□□□□□ -0.71
CCDC40-207ENST00000572253 OR2T12Q8NG77 320 aa10.64□□□□□ -0.71
CCDC40-207ENST00000572253 FAM162AQ96A26 154 aa10.64□□□□□ -0.71
CCDC40-207ENST00000572253 TOR3AQ9H497 397 aa10.64□□□□□ -0.71
CCDC40-207ENST00000572253 HMG20AQ9NP66 347 aa10.64□□□□□ -0.71
CCDC40-207ENST00000572253 OLA1Q9NTK5 396 aaKnown RBP10.64□□□□□ -0.71
CCDC40-207ENST00000572253 BAG5Q9UL15 447 aa10.64□□□□□ -0.71
CCDC40-207ENST00000572253 USP22Q9UPT9 525 aa10.64□□□□□ -0.71
CCDC40-207ENST00000572253 TANC1Q9C0D5 1861 aa10.64□□□□□ -0.71
CCDC40-207ENST00000572253 A0A1B0GTL3 188 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 ARNTLO00327 626 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 ENPP3O14638 875 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 PRAMEF11O60813 436 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 CST1P01037 141 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 MSH3P20585 1137 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 CRHBPP24387 322 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 PRDX3P30048 256 aaKnown RBP10.63□□□□□ -0.71
CCDC40-207ENST00000572253 AKT1P31749 480 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 GABARAPL2P60520 117 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 GNA12Q03113 381 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 TRIP4Q15650 581 aaPredicted RBP10.63□□□□□ -0.71
CCDC40-207ENST00000572253 FXNQ16595 210 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 NFE2Q16621 373 aaPredicted RBP10.63□□□□□ -0.71
CCDC40-207ENST00000572253 CRTC3Q6UUV7 619 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 TTC30BQ8N4P2 665 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 DTWD1Q8N5C7 304 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 NLGN2Q8NFZ4 835 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 OR4K2Q8NGD2 314 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 OR8J3Q8NGG0 315 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 PROKR1Q8TCW9 393 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 LINGO1Q96FE5 620 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 SH3GL1Q99961 368 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 RBM4BQ9BQ04 359 aaKnown RBP10.63□□□□□ -0.71
CCDC40-207ENST00000572253 THUMPD3Q9BV44 507 aaKnown RBP10.63□□□□□ -0.71
CCDC40-207ENST00000572253 RBM4Q9BWF3 364 aaKnown RBP10.63□□□□□ -0.71
CCDC40-207ENST00000572253 TDRD1Q9BXT4 1180 aaKnown RBP10.63□□□□□ -0.71
CCDC40-207ENST00000572253 LHPPQ9H008 270 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 NYNRINQ9P2P1 1898 aaKnown RBP10.63□□□□□ -0.71
CCDC40-207ENST00000572253 LIMD1Q9UGP4 676 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 AP3M1Q9Y2T2 418 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 B4GAT1O43505 415 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 DNAJB5O75953 348 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 GGT1P19440 569 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 JAK1P23458 1154 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 TTPAP49638 278 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 IHHQ14623 411 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 IMPG1Q17R60 797 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 C10orf120Q5SQS8 335 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 UGT3A1Q6NUS8 523 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 CYP20A1Q6UW02 462 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 ITIH5Q86UX2 942 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 FBXO30Q8TB52 745 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 IGSF8Q969P0 613 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 CINPQ9BW66 212 aaPredicted RBP10.63□□□□□ -0.71
CCDC40-207ENST00000572253 SARS2Q9NP81 518 aaKnown RBP10.63□□□□□ -0.71
CCDC40-207ENST00000572253 HEBP1Q9NRV9 189 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 C3orf18Q9UK00 162 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 ERGIC3Q9Y282 383 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 TNPO3Q9Y5L0 923 aaKnown RBP10.63□□□□□ -0.71
CCDC40-207ENST00000572253 DICER1Q9UPY3 1922 aaKnown RBP10.63□□□□□ -0.71
CCDC40-207ENST00000572253 CLDN25C9JDP6 229 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 OR4Q2P0C623 313 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 IL7RP16871 459 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 POLR2IP36954 125 aaKnown RBP10.63□□□□□ -0.71
CCDC40-207ENST00000572253 MAP2K5Q13163 448 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 C6orf141Q5SZD1 244 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 SDHAF4Q5VUM1 108 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 ADHFE1Q8IWW8 467 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 ZNF683Q8IZ20 524 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 EID3Q8N140 333 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 OR2T11Q8NH01 316 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 BRI3BPQ8WY22 251 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 NCLNQ969V3 563 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 ITPKCQ96DU7 683 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 PPP3R2Q96LZ3 170 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 DGCR6LQ9BY27 220 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 CCDC90BQ9GZT6 254 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 NUDT4Q9NZJ9 180 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 MARCH2Q9P0N8 246 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 PCDHB8Q9UN66 801 aa10.63□□□□□ -0.71
CCDC40-207ENST00000572253 EIF3LQ9Y262 564 aaKnown RBP10.63□□□□□ -0.71
CCDC40-207ENST00000572253 IGLV3-10A0A075B6K4 115 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 SLC12A8A0AV02 714 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 KLK8O60259 260 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 IL12AP29459 219 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 ACVRL1P37023 503 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 RAD23AP54725 363 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 PLIN5Q00G26 463 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 TAF1AQ15573 450 aaPredicted RBP10.62□□□□□ -0.71
CCDC40-207ENST00000572253 SULT1C3Q6IMI6 304 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 SLC47A1Q96FL8 570 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 ZNF347Q96SE7 839 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 WDR12Q9GZL7 423 aaKnown RBP10.62□□□□□ -0.71
CCDC40-207ENST00000572253 NTN4Q9HB63 628 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 ATAD3AQ9NVI7 634 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 FAM118AQ9NWS6 357 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 DAPK2Q9UIK4 370 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 SOBPA7XYQ1 873 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms