RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ISCA2Q86U28 154 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 PTOV1Q86YD1 416 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 ZNF440Q8IYI8 595 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 GSDMBQ8TAX9 411 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 METTL6Q8TCB7 284 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 KCNG4Q8TDN1 519 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 POMGNT1Q8WZA1 660 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 ZNF689Q96CS4 500 aaPredicted RBP2.63□□□□□ -1.99
VPS35-207ENST00000568191 GIMAP5Q96F15 307 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 GMPPAQ96IJ6 420 aaPredicted RBP2.63□□□□□ -1.99
VPS35-207ENST00000568191 NSL1Q96IY1 281 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 PPP1R13BQ96KQ4 1090 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 PIP5K1AQ99755 562 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 PIGMQ9H3S5 423 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 C9orf78Q9NZ63 289 aaPredicted RBP2.63□□□□□ -1.99
VPS35-207ENST00000568191 KLHL9Q9P2J3 617 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 LIMA1Q9UHB6 759 aaKnown RBP2.63□□□□□ -1.99
VPS35-207ENST00000568191 MTMR6Q9Y217 621 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 EXOGQ9Y2C4 368 aaKnown RBP2.63□□□□□ -1.99
VPS35-207ENST00000568191 RABGAP1Q9Y3P9 1069 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 FLT1P17948 1338 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 MEIOCA2RUB1 952 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 KRTAP9-6A8MVA2 160 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 SCAMP1O15126 338 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 TGFB1I1O43294 461 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 ZNF821O75541 412 aaPredicted RBP2.62□□□□□ -1.99
VPS35-207ENST00000568191 MLYCDO95822 493 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 ICAM1P05362 532 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 FAM157CP0CG43 387 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 CEACAM1P13688 526 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 ANXA7P20073 488 aaKnown RBP2.62□□□□□ -1.99
VPS35-207ENST00000568191 ICAM3P32942 547 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 BSGP35613 385 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 RGS2P41220 211 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 SLC8A3P57103 927 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 NIPAL4Q0D2K0 466 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 MFAP5Q13361 173 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 RRS1Q15050 365 aaKnown RBP2.62□□□□□ -1.99
VPS35-207ENST00000568191 TAF13Q15543 124 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 UGP2Q16851 508 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 R3HCC1LQ7Z5L2 792 aaKnown RBP2.62□□□□□ -1.99
VPS35-207ENST00000568191 P2RY8Q86VZ1 359 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 RASGEF1CQ8N431 466 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 ZNF611Q8N823 705 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 FRMD1Q8N878 549 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 BMPERQ8N8U9 685 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 TMEM116Q8NCL8 245 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 OR2T6Q8NHC8 308 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 ZUFSPQ96AP4 578 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 AGAP3Q96P47 875 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 PSMD1Q99460 953 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 DCTN5Q9BTE1 182 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 DENND2DQ9H6A0 471 aaPredicted RBP2.62□□□□□ -1.99
VPS35-207ENST00000568191 PREBQ9HCU5 417 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 OLFML3Q9NRN5 406 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 ATAD3AQ9NVI7 634 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 RASAL2Q9UJF2 1139 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 SLC7A7Q9UM01 511 aa2.62□□□□□ -1.99
VPS35-207ENST00000568191 TMEM184BQ9Y519 407 aaPredicted RBP2.62□□□□□ -1.99
VPS35-207ENST00000568191 A0A1B0GVY2 172 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 A6NLC8 198 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 MAGEB17A8MXT2 336 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 H3BQ06 376 aaPredicted RBP2.61□□□□□ -1.99
VPS35-207ENST00000568191 SMAD9O15198 467 aaKnown RBP2.61□□□□□ -1.99
VPS35-207ENST00000568191 SYNCRIPO60506 623 aaKnown RBP2.61□□□□□ -1.99
VPS35-207ENST00000568191 KCNK5O95279 499 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 CKMT2P17540 419 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 MRPS5P82675 430 aaKnown RBP2.61□□□□□ -1.99
VPS35-207ENST00000568191 SPOCK1Q08629 439 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 GAGE2BQ13066 116 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 MVPQ14764 893 aaKnown RBP2.61□□□□□ -1.99
VPS35-207ENST00000568191 TEAD2Q15562 447 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 MEP1AQ16819 746 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 GAGE2EQ4V326 116 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 SOWAHCQ53LP3 525 aaPredicted RBP2.61□□□□□ -1.99
VPS35-207ENST00000568191 ACSM2BQ68CK6 577 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 GAGE2AQ6NT46 116 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 KLC3Q6P597 504 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 CPLX4Q7Z7G2 160 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 GALNT5Q7Z7M9 940 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 PLD3Q8IV08 490 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 SMC5Q8IY18 1101 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 DIS3L2Q8IYB7 885 aaKnown RBP2.61□□□□□ -1.99
VPS35-207ENST00000568191 LSMEM2Q8N112 164 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 PPFIBP2Q8ND30 876 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 OR2T12Q8NG77 320 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 SUSD6Q92537 303 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 PERPQ96FX8 193 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 ATOH8Q96SQ7 321 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 RBM4BQ9BQ04 359 aaKnown RBP2.61□□□□□ -1.99
VPS35-207ENST00000568191 SLX1AQ9BQ83 275 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 RTP3Q9BQQ7 232 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 SYT15Q9BQS2 421 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 SIX2Q9NPC8 291 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 FLRT3Q9NZU0 649 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 GAGE2DQ9UEU5 116 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 CACNG5Q9UF02 275 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 KCNE2Q9Y6J6 123 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 CACNA1FO60840 1977 aa2.61□□□□□ -1.99
VPS35-207ENST00000568191 DISP3Q9P2K9 1392 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms