RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ARMC3Q5W041 872 aa19.22■□□□□ 0.67
CLN3-225ENST00000566824 PACS1Q6VY07 963 aa19.22■□□□□ 0.67
CLN3-225ENST00000566824 EFL1Q7Z2Z2 1120 aaKnown RBP19.22■□□□□ 0.67
CLN3-225ENST00000566824 AMZ2Q86W34 360 aa19.22■□□□□ 0.67
CLN3-225ENST00000566824 SPNS2Q8IVW8 549 aa19.22■□□□□ 0.67
CLN3-225ENST00000566824 FBXO25Q8TCJ0 367 aa19.22■□□□□ 0.67
CLN3-225ENST00000566824 LKAAEAR1Q8TD35 194 aa19.22■□□□□ 0.67
CLN3-225ENST00000566824 CFAP36Q96G28 342 aa19.22■□□□□ 0.67
CLN3-225ENST00000566824 RAB17Q9H0T7 212 aa19.22■□□□□ 0.67
CLN3-225ENST00000566824 WDR37Q9Y2I8 494 aa19.22■□□□□ 0.67
CLN3-225ENST00000566824 RNF215Q9Y6U7 377 aa19.22■□□□□ 0.67
CLN3-225ENST00000566824 FAM169AQ9Y6X4 670 aa19.22■□□□□ 0.67
CLN3-225ENST00000566824 PRAMEF33A0A0G2JMD5 474 aa19.21■□□□□ 0.67
CLN3-225ENST00000566824 EME2A4GXA9 379 aaPredicted RBP19.21■□□□□ 0.67
CLN3-225ENST00000566824 ESPNB1AK53 854 aa19.21■□□□□ 0.67
CLN3-225ENST00000566824 E7ESA3 106 aa19.21■□□□□ 0.67
CLN3-225ENST00000566824 RALBP11234 206 aa19.21■□□□□ 0.67
CLN3-225ENST00000566824 CALCOCO2Q13137 446 aa19.21■□□□□ 0.67
CLN3-225ENST00000566824 NEPROQ6NW34 567 aa19.21■□□□□ 0.67
CLN3-225ENST00000566824 NAPRTQ6XQN6 538 aa19.21■□□□□ 0.67
CLN3-225ENST00000566824 UNC5AQ6ZN44 842 aa19.21■□□□□ 0.67
CLN3-225ENST00000566824 CENPUQ71F23 418 aa19.21■□□□□ 0.67
CLN3-225ENST00000566824 DENND6AQ8IWF6 608 aa19.21■□□□□ 0.67
CLN3-225ENST00000566824 ARL14Q8N4G2 192 aa19.21■□□□□ 0.67
CLN3-225ENST00000566824 BBOF1Q8ND07 529 aa19.21■□□□□ 0.67
CLN3-225ENST00000566824 GPR150Q8NGU9 434 aa19.21■□□□□ 0.67
CLN3-225ENST00000566824 IFI44Q8TCB0 444 aa19.21■□□□□ 0.67
CLN3-225ENST00000566824 SLC37A2Q8TED4 501 aa19.21■□□□□ 0.67
CLN3-225ENST00000566824 HEXDCQ8WVB3 486 aa19.21■□□□□ 0.67
CLN3-225ENST00000566824 SEC14L1Q92503 715 aa19.21■□□□□ 0.67
CLN3-225ENST00000566824 TBRG4Q969Z0 631 aaKnown RBP eCLIP19.21■□□□□ 0.67
CLN3-225ENST00000566824 C20orf96Q9NUD7 363 aaPredicted RBP19.21■□□□□ 0.67
CLN3-225ENST00000566824 SLC17A6Q9P2U8 582 aa19.21■□□□□ 0.67
CLN3-225ENST00000566824 MGAT4DA6NG13 374 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 IQCF5A8MTL0 148 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 CFAP99D6REC4 459 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 ERVK-10P10266 1014 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 NSG1P42857 185 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 DMPKQ09013 629 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 CBLBQ13191 982 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 LONRF1Q17RB8 773 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 LYPLAL1Q5VWZ2 237 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 IYDQ6PHW0 289 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 DHRS13Q6UX07 377 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 CERS6Q6ZMG9 384 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 MARCH9Q86YJ5 346 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 OTUD6BQ8N6M0 293 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 CEP112Q8N8E3 955 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 SERBP1Q8NC51 408 aaKnown RBP eCLIP19.2■□□□□ 0.66
CLN3-225ENST00000566824 FBXO36Q8NEA4 188 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 OR2L2Q8NH16 312 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 GLMNQ92990 594 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 CCDC74AQ96AQ1 378 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 ZNF514Q96K75 400 aaPredicted RBP19.2■□□□□ 0.66
CLN3-225ENST00000566824 LINC00615Q96LM1 132 aaPredicted RBP19.2■□□□□ 0.66
CLN3-225ENST00000566824 P2RY12Q9H244 342 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 L2HGDHQ9H9P8 463 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 EPB41L5Q9HCM4 733 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 ZDHHC18Q9NUE0 388 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 ZC3H7BQ9UGR2 993 aaKnown RBP19.2■□□□□ 0.66
CLN3-225ENST00000566824 PSMD13Q9UNM6 376 aa19.2■□□□□ 0.66
CLN3-225ENST00000566824 DNMT3AQ9Y6K1 912 aaPredicted RBP19.2■□□□□ 0.66
CLN3-225ENST00000566824 UNC13CQ8NB66 2214 aa19.19■□□□□ 0.66
CLN3-225ENST00000566824 MED19A0JLT2 244 aaPredicted RBP19.19■□□□□ 0.66
CLN3-225ENST00000566824 PPM1DO15297 605 aa19.19■□□□□ 0.66
CLN3-225ENST00000566824 RFPL3O75679 317 aa19.19■□□□□ 0.66
CLN3-225ENST00000566824 POLBP06746 335 aa19.19■□□□□ 0.66
CLN3-225ENST00000566824 ITGB6P18564 788 aa19.19■□□□□ 0.66
CLN3-225ENST00000566824 PAMP19021 973 aa19.19■□□□□ 0.66
CLN3-225ENST00000566824 CTBP1Q13363 440 aa19.19■□□□□ 0.66
CLN3-225ENST00000566824 CLCA4Q14CN2 919 aa19.19■□□□□ 0.66
CLN3-225ENST00000566824 TYSND1Q2T9J0 566 aa19.19■□□□□ 0.66
CLN3-225ENST00000566824 HSP90AA5PQ58FG0 334 aa19.19■□□□□ 0.66
CLN3-225ENST00000566824 STEAP4Q687X5 459 aa19.19■□□□□ 0.66
CLN3-225ENST00000566824 ZNF470Q6ECI4 717 aa19.19■□□□□ 0.66
CLN3-225ENST00000566824 TRMT10BQ6PF06 316 aaKnown RBP19.19■□□□□ 0.66
CLN3-225ENST00000566824 ZNF761Q86XN6 746 aaPredicted RBP19.19■□□□□ 0.66
CLN3-225ENST00000566824 KRT222Q8N1A0 295 aa19.19■□□□□ 0.66
CLN3-225ENST00000566824 SFRP1Q8N474 314 aa19.19■□□□□ 0.66
CLN3-225ENST00000566824 CHCHD4Q8N4Q1 142 aa19.19■□□□□ 0.66
CLN3-225ENST00000566824 LPGAT1Q92604 370 aa19.19■□□□□ 0.66
CLN3-225ENST00000566824 CCM2Q9BSQ5 444 aa19.19■□□□□ 0.66
CLN3-225ENST00000566824 SAYSD1Q9NPB0 183 aa19.19■□□□□ 0.66
CLN3-225ENST00000566824 ZNF624Q9P2J8 865 aaPredicted RBP19.19■□□□□ 0.66
CLN3-225ENST00000566824 APOBEC2Q9Y235 224 aaKnown RBP19.19■□□□□ 0.66
CLN3-225ENST00000566824 AKAP13Q12802 2813 aa19.18■□□□□ 0.66
CLN3-225ENST00000566824 OR52A4PA6NMU1 304 aa19.18■□□□□ 0.66
CLN3-225ENST00000566824 PDZK1P1A8MUH7 402 aa19.18■□□□□ 0.66
CLN3-225ENST00000566824 AP2A2O94973 939 aa19.18■□□□□ 0.66
CLN3-225ENST00000566824 S1PR4O95977 384 aa19.18■□□□□ 0.66
CLN3-225ENST00000566824 F3P13726 295 aa19.18■□□□□ 0.66
CLN3-225ENST00000566824 SLC1A2P43004 574 aa19.18■□□□□ 0.66
CLN3-225ENST00000566824 RPIAP49247 311 aa19.18■□□□□ 0.66
CLN3-225ENST00000566824 TTPAP49638 278 aa19.18■□□□□ 0.66
CLN3-225ENST00000566824 DUSP3P51452 185 aaPredicted RBP19.18■□□□□ 0.66
CLN3-225ENST00000566824 AARS2Q5JTZ9 985 aaKnown RBP19.18■□□□□ 0.66
CLN3-225ENST00000566824 SPANXN3Q5MJ09 141 aa19.18■□□□□ 0.66
CLN3-225ENST00000566824 CTSL3PQ5NE16 218 aa19.18■□□□□ 0.66
CLN3-225ENST00000566824 METRNLQ641Q3 311 aa19.18■□□□□ 0.66
CLN3-225ENST00000566824 CILP2Q8IUL8 1156 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms