RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 NUP85Q9BW27 656 aa10.13□□□□□ -0.79
SF3B3-204ENST00000563739 POLR1EQ9GZS1 481 aaKnown RBP10.13□□□□□ -0.79
SF3B3-204ENST00000563739 HSD3B7Q9H2F3 369 aa10.13□□□□□ -0.79
SF3B3-204ENST00000563739 ZNF552Q9H707 407 aaPredicted RBP10.13□□□□□ -0.79
SF3B3-204ENST00000563739 PCDH9Q9HC56 1237 aa10.13□□□□□ -0.79
SF3B3-204ENST00000563739 PDE7BQ9NP56 450 aa10.13□□□□□ -0.79
SF3B3-204ENST00000563739 LATS2Q9NRM7 1088 aa10.13□□□□□ -0.79
SF3B3-204ENST00000563739 GPR83Q9NYM4 423 aa10.13□□□□□ -0.79
SF3B3-204ENST00000563739 TRIM10Q9UDY6 481 aa10.13□□□□□ -0.79
SF3B3-204ENST00000563739 NCOA6Q14686 2063 aaPredicted RBP10.12□□□□□ -0.79
SF3B3-204ENST00000563739 TLCD2A6NGC4 264 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 H3BMH7 237 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 H3BRJ5 948 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 MEN1O00255 615 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 PRPSAP2O60256 369 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 ZG16O60844 167 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 KLF7O75840 302 aaPredicted RBP10.12□□□□□ -0.79
SF3B3-204ENST00000563739 PIRTP0C851 137 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 PCK1P35558 622 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 ZNF135P52742 658 aaPredicted RBP10.12□□□□□ -0.79
SF3B3-204ENST00000563739 CTSCP53634 463 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 RPS15P62841 145 aaKnown RBP10.12□□□□□ -0.79
SF3B3-204ENST00000563739 TESK1Q15569 626 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 ZRSR2Q15696 482 aaKnown RBP10.12□□□□□ -0.79
SF3B3-204ENST00000563739 TPD52L1Q16890 204 aaPredicted RBP10.12□□□□□ -0.79
SF3B3-204ENST00000563739 INSCQ1MX18 579 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 TDRD12Q587J7 1177 aaKnown RBP10.12□□□□□ -0.79
SF3B3-204ENST00000563739 ZNF569Q5MCW4 686 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 VWA5B1Q5TIE3 1220 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 IGFL3Q6UXB1 125 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 Q6ZS92 163 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 MRGPREQ86SM8 312 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 LRRTM4Q86VH4 590 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 HPS6Q86YV9 775 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 IQCKQ8N0W5 287 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 SLC34A3Q8N130 599 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 CNTD1Q8N815 330 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 OR1L3Q8NH93 324 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 UBE2Q2Q8WVN8 375 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 MR1Q95460 341 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 TADA1Q96BN2 335 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 ZDHHC12Q96GR4 267 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 PCMTD1Q96MG8 357 aaPredicted RBP10.12□□□□□ -0.79
SF3B3-204ENST00000563739 NLNQ9BYT8 704 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 TRIM39Q9HCM9 518 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.12□□□□□ -0.79
SF3B3-204ENST00000563739 SEPT11Q9NVA2 429 aaKnown RBP10.12□□□□□ -0.79
SF3B3-204ENST00000563739 BTRCQ9Y297 605 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 B3GNT3Q9Y2A9 372 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 SPO11Q9Y5K1 396 aa10.12□□□□□ -0.79
SF3B3-204ENST00000563739 CNTRLQ7Z7A1 2325 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 A0A1B0GTL3 188 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 RGSL1A5PLK6 1076 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 ANKRD62A6NC57 917 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 OR5K3A6NET4 321 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 TMCO5BA8MYB1 307 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 GPR89AB7ZAQ6 455 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 DDX3XO00571 662 aaKnown RBP eCLIP10.11□□□□□ -0.79
SF3B3-204ENST00000563739 GAPDHSO14556 408 aaPredicted RBP10.11□□□□□ -0.79
SF3B3-204ENST00000563739 AURKAO14965 403 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 KMOO15229 486 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 HNRNPRO43390 633 aaKnown RBP10.11□□□□□ -0.79
SF3B3-204ENST00000563739 GPR89BP0CG08 455 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 BPIP17213 487 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 RPL26P61254 145 aaKnown RBP10.11□□□□□ -0.79
SF3B3-204ENST00000563739 TUBB4BP68371 445 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 ACY1Q03154 408 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 DMPKQ09013 629 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 SLC10A2Q12908 348 aaPredicted RBP10.11□□□□□ -0.79
SF3B3-204ENST00000563739 ZBTB17Q13105 803 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 TUBB2AQ13885 445 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 GALNT3Q14435 633 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 PAFAH1B3Q15102 231 aaKnown RBP10.11□□□□□ -0.79
SF3B3-204ENST00000563739 RPE65Q16518 533 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 PTCHD3Q3KNS1 767 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 RBM43Q6ZSC3 357 aaKnown RBP10.11□□□□□ -0.79
SF3B3-204ENST00000563739 TMC3Q7Z5M5 1100 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 KCNMB4Q86W47 210 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 KMT5CQ86Y97 462 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 TRIM48Q8IWZ4 208 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 MCEMP1Q8IX19 187 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 RBM12BQ8IXT5 1001 aaKnown RBP10.11□□□□□ -0.79
SF3B3-204ENST00000563739 SYTL1Q8IYJ3 562 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 TRAM1L1Q8N609 369 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 ST6GALNAC3Q8NDV1 305 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 HSPH1Q92598 858 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 FATE1Q969F0 183 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 TUBB2BQ9BVA1 445 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 TLR10Q9BXR5 811 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 ZWILCHQ9H900 591 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 PARVAQ9NVD7 372 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 PKD2L2Q9NZM6 624 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 C5AR2Q9P296 337 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 MAP10Q9P2G4 905 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 DNPEPQ9ULA0 475 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 SNX7Q9UNH6 387 aa10.11□□□□□ -0.79
SF3B3-204ENST00000563739 RPL26L1Q9UNX3 145 aaKnown RBP10.11□□□□□ -0.79
SF3B3-204ENST00000563739 MYO7BQ6PIF6 2116 aa10.1□□□□□ -0.79
SF3B3-204ENST00000563739 LGALS16A8MUM7 142 aa10.1□□□□□ -0.79
SF3B3-204ENST00000563739 ANKRD66B4E2M5 251 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms