RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 TUBD1Q9UJT1 453 aa11.42□□□□□ -0.58
USP3-220ENST00000561381 CROTQ9UKG9 612 aa11.42□□□□□ -0.58
USP3-220ENST00000561381 GAPDHSO14556 408 aaPredicted RBP11.41□□□□□ -0.58
USP3-220ENST00000561381 CBFA2T2O43439 604 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 KIAA0754O94854 1291 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 NDUFA10O95299 355 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 TIAF1O95411 115 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 FURINP09958 794 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 TCN2P20062 427 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 DLSTP36957 453 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 CAPZBP47756 277 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 MARCKSL1P49006 195 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 NR2C2P49116 596 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 GTF2H3Q13889 308 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 MAP7Q14244 749 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 PTPRCAPQ14761 206 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 AGAP9Q5VTM2 703 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 C6orf15Q6UXA7 325 aaPredicted RBP11.41□□□□□ -0.58
USP3-220ENST00000561381 SPOCD1Q6ZMY3 1216 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 PRSS42Q7Z5A4 293 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 TMEM135Q86UB9 458 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 RASGRP3Q8IV61 690 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 ZNF567Q8N184 647 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 IPMKQ8NFU5 416 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 C9orf43Q8TAL5 461 aaPredicted RBP11.41□□□□□ -0.58
USP3-220ENST00000561381 BLOC1S5Q8TDH9 187 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 APOBEC4Q8WW27 367 aaKnown RBP11.41□□□□□ -0.58
USP3-220ENST00000561381 ABHD17AQ96GS6 310 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 MRGPRX2Q96LB1 330 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 SRPK1Q96SB4 655 aaKnown RBP11.41□□□□□ -0.58
USP3-220ENST00000561381 EFHD1Q9BUP0 239 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 C10orf88Q9H8K7 445 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 IL17CQ9P0M4 197 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 KLHL8Q9P2G9 620 aaPredicted RBP11.41□□□□□ -0.58
USP3-220ENST00000561381 PSMD13Q9UNM6 376 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 TFR2Q9UP52 801 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 ALG6Q9Y672 507 aa11.41□□□□□ -0.58
USP3-220ENST00000561381 NBASA2RRP1 2371 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 IGHV5-51A0A0C4DH38 117 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 OR2AG2A6NM03 316 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 C3orf80F5H4A9 247 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 TOX3O15405 576 aaPredicted RBP11.4□□□□□ -0.58
USP3-220ENST00000561381 POP7O75817 140 aaKnown RBP11.4□□□□□ -0.58
USP3-220ENST00000561381 EPOP01588 193 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 TPM1P09493 284 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 NR1D1P20393 614 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 PBLDP30039 288 aaPredicted RBP11.4□□□□□ -0.58
USP3-220ENST00000561381 SPAM1P38567 509 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 TFDP2Q14188 446 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 ERV3-1Q14264 604 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 NFE2L1Q14494 772 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 IL11RAQ14626 422 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 KCNAB1Q14722 419 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 TCEAL1Q15170 157 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 SLC1A5Q15758 541 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 IGFBP7Q16270 282 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 RPE65Q16518 533 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 GPRC6AQ5T6X5 926 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 TMEM220Q6QAJ8 160 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 CERS6Q6ZMG9 384 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 PID1Q7Z2X4 250 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 GLT6D1Q7Z4J2 308 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 AMZ2Q86W34 360 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 BEND7Q8N7W2 519 aaPredicted RBP11.4□□□□□ -0.58
USP3-220ENST00000561381 RNF214Q8ND24 703 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 KLHL6Q8WZ60 621 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 P3H4Q92791 437 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 ZDHHC12Q96GR4 267 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 TTC25Q96NG3 672 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 FCRL5Q96RD9 977 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 LNPEPQ9UIQ6 1025 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 INTUQ9ULD6 942 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 CFAP20Q9Y6A4 193 aaKnown RBP11.4□□□□□ -0.58
USP3-220ENST00000561381 HECTD1Q9ULT8 2610 aa11.4□□□□□ -0.58
USP3-220ENST00000561381 DOPEY2Q9Y3R5 2298 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 hCG_1818297A0A087WSY0 165 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 GLYATL1P3A0A0U1RQE8 302 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 K7EM74 188 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 PSTPIP1O43586 416 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 KATNA1O75449 491 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 SPAG6O75602 509 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 AGTP01019 485 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 FGF5P12034 268 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 FOLR1P15328 257 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 VCLP18206 1134 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 NELFEP18615 380 aaKnown RBP11.39□□□□□ -0.59
USP3-220ENST00000561381 FECHP22830 423 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 CASRP41180 1078 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 MC1RQ01726 317 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 OLIG2Q13516 323 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 PPP2R5EQ16537 467 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 TFDP3Q5H9I0 405 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 DUS1LQ6P1R4 473 aaKnown RBP11.39□□□□□ -0.59
USP3-220ENST00000561381 BZW1Q7L1Q6 419 aaKnown RBP11.39□□□□□ -0.59
USP3-220ENST00000561381 DET1Q7L5Y6 550 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 RBM12BQ8IXT5 1001 aaKnown RBP11.39□□□□□ -0.59
USP3-220ENST00000561381 DDHD1Q8NEL9 900 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 BRSK1Q8TDC3 778 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 KRT35Q92764 455 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 STAMBPL1Q96FJ0 436 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms