RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 HEPACAMQ14CZ8 416 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 PRR23BQ6ZRT6 265 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 TTC29Q8NA56 475 aaPredicted RBP13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 IL31RAQ8NI17 732 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 DNASE1L2Q92874 299 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 LPPQ93052 612 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 FATE1Q969F0 183 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 FAXDC2Q96IV6 333 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 MAGEH1Q9H213 219 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 ZNF304Q9HCX3 659 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 TLL2Q9Y6L7 1015 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 METTL21EPA6NDL7 271 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 CLDN4O14493 209 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 MATN3O15232 486 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 GATBO75879 557 aaKnown RBP13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 C1RP00736 705 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 CD2P06729 351 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 OR1D2P34982 312 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 GJA8P48165 433 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 HADHBP55084 474 aaKnown RBP13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 AP1S1P61966 158 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 IFI44LQ53G44 452 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 KLHL22Q53GT1 634 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 OTOP3Q7RTS5 596 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 UNC5BQ8IZJ1 945 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 TSEN15Q8WW01 171 aaKnown RBP13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 ZNF347Q96SE7 839 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 B3GNT5Q9BYG0 378 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 FAM83DQ9H4H8 585 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 TBC1D24Q9ULP9 559 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 SMIM28A0A1B0GU29 152 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 RPLP0P05388 317 aaKnown RBP13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 GABRR2P28476 465 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 HNRNPDQ14103 355 aaKnown RBP13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 SDHAF4Q5VUM1 108 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 CXorf57Q6NSI4 855 aaKnown RBP13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 TMEM139Q8IV31 216 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 IPCEF1Q8WWN9 437 aaPredicted RBP13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 KCTD15Q96SI1 283 aaPredicted RBP13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 ANKRA2Q9H9E1 313 aa13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 PAK6Q9NQU5 681 aaPredicted RBP13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 EIF2B3Q9NR50 452 aaKnown RBP13.07□□□□□ -0.32
CSPG4P11-201ENST00000560634 MEGF6O75095 1541 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 FAM155BO75949 473 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 C4BPAP04003 597 aaKnown RBP13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 GSTT2BP0CG30 244 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 PRKAR2AP13861 404 aaKnown RBP13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 BRCC3P46736 316 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 MAPK12P53778 367 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 CYP4F8P98187 520 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 ADNP2Q6IQ32 1131 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 ZCCHC12Q6PEW1 402 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 ABHD15Q6UXT9 468 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 RANBP3LQ86VV4 465 aaPredicted RBP13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 LRRC57Q8N9N7 239 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 MINDY2Q8NBR6 621 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 BRINP2Q9C0B6 783 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 PCDHGA11Q9Y5H2 935 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 DNASE1L1P49184 302 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 PPM1JQ5JR12 505 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 TSTD2Q5T7W7 516 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 QSOX2Q6ZRP7 698 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 USP30Q70CQ3 517 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 C4orf32Q8N8J7 132 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 TOP1MTQ969P6 601 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 EQTNQ9NQ60 294 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 DNAJB9Q9UBS3 223 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 RUVBL1Q9Y265 456 aaKnown RBP13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 TRIM17Q9Y577 477 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 COLEC10Q9Y6Z7 277 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 A0A1W2PQH9 124 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 A8MUI8 341 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 E9PAM4 449 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 NR4A1P22736 598 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 PTGER3P43115 390 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 GTF2H2Q13888 395 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 FSTL4Q6MZW2 842 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 GTF2H2CQ6P1K8 395 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 FRRS1Q6ZNA5 592 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 IQCF2Q8IXL9 164 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 DQX1Q8TE96 717 aaKnown RBP13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 EZH1Q92800 747 aaPredicted RBP13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 CADM1Q9BY67 442 aaKnown RBP13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 CCDC177Q9NQR7 707 aaPredicted RBP13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 DEC1Q9P2X7 70 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 ZC3H13Q5T200 1668 aaKnown RBP13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 FAM149AA5PLN7 773 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 AQP12BA6NM10 295 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 MAGEB17A8MXT2 336 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 TRIM3O75382 744 aaPredicted RBP13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 NME6O75414 186 aaPredicted RBP13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 ZNF432O94892 652 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 PRNPP04156 253 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 RAP2AP10114 183 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 ANXA8P13928 327 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 TACR2P21452 398 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 SLC6A4P31645 630 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 CTNNB1P35222 781 aa13.06□□□□□ -0.32
CSPG4P11-201ENST00000560634 HSPA7P48741 367 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms