RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 TMEM253P0C7T8 217 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 FOLR1P15328 257 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 NR1D1P20393 614 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 HNRNPH3P31942 346 aaKnown RBP8.98□□□□□ -0.97
HDDC3-204ENST00000559834 SPAM1P38567 509 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 PGDP52209 483 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 DMPKQ09013 629 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 ITGA9Q13797 1035 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 PLCL1Q15111 1095 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 RPE65Q16518 533 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 PPP2R5EQ16537 467 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 KHDC1Q4VXA5 237 aaKnown RBP8.98□□□□□ -0.97
HDDC3-204ENST00000559834 DNTTIP2Q5QJE6 756 aaKnown RBP8.98□□□□□ -0.97
HDDC3-204ENST00000559834 FHL5Q5TD97 284 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 LRRC38Q5VT99 294 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 PWWP2BQ6NUJ5 590 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 CAVIN1Q6NZI2 390 aaKnown RBP8.98□□□□□ -0.97
HDDC3-204ENST00000559834 C11orf96Q7Z7L8 435 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 SYVN1Q86TM6 617 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 TMEM135Q86UB9 458 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 RFX6Q8HWS3 928 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 GALNT11Q8NCW6 608 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 OR8K5Q8NH50 307 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 SPATA22Q8NHS9 363 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 SLC35G2Q8TBE7 412 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 CT55Q8WUE5 264 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 RNF31Q96EP0 1072 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 ZNF514Q96K75 400 aaPredicted RBP8.98□□□□□ -0.97
HDDC3-204ENST00000559834 TEKT5Q96M29 485 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 MAP3K3Q99759 626 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 SLC25A23Q9BV35 468 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 CEP41Q9BYV8 373 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 ACTL8Q9H568 366 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 IL26Q9NPH9 171 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 ACSS2Q9NR19 701 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 FGF21Q9NSA1 209 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 ZNHIT6Q9NWK9 470 aaKnown RBP8.98□□□□□ -0.97
HDDC3-204ENST00000559834 HRASLS2Q9NWW9 162 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 DDX56Q9NY93 547 aaKnown RBP8.98□□□□□ -0.97
HDDC3-204ENST00000559834 UBP1Q9NZI7 540 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 G3BP2Q9UN86 482 aaKnown RBP8.98□□□□□ -0.97
HDDC3-204ENST00000559834 FARSAQ9Y285 508 aaKnown RBP8.98□□□□□ -0.97
HDDC3-204ENST00000559834 PKP3Q9Y446 797 aa8.98□□□□□ -0.97
HDDC3-204ENST00000559834 PCDHGA9Q9Y5G4 932 aaKnown RBP8.98□□□□□ -0.97
HDDC3-204ENST00000559834 LOC285095A0A1B0GVY8 99 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 SSU72P8A0A1W2PR75 194 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 TLCD2A6NGC4 264 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 C3orf70A6NLC5 250 aaPredicted RBP8.97□□□□□ -0.97
HDDC3-204ENST00000559834 AURKAO14965 403 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 MAP3K7O43318 606 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 AKR1B10O60218 316 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 UGT1A9O60656 530 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 CPNE3O75131 537 aaKnown RBP8.97□□□□□ -0.97
HDDC3-204ENST00000559834 AGFG2O95081 481 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 TIAF1O95411 115 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 ZBTB11O95625 1053 aaPredicted RBP8.97□□□□□ -0.97
HDDC3-204ENST00000559834 GYPCP04921 128 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 PYGMP11217 842 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 UGT1A6P19224 532 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 UGT1A1P22309 533 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 UGT1A4P22310 534 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 PTPN3P26045 913 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 VARSP26640 1264 aaKnown RBP8.97□□□□□ -0.97
HDDC3-204ENST00000559834 SLC1A1P43005 524 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 CCL11P51671 97 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 WNT3AP56704 352 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 TUBB4BP68371 445 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 XRCC4Q13426 336 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 TUBB2AQ13885 445 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 TFDP2Q14188 446 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 KCNAB1Q14722 419 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 UGT8Q16880 541 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 LONRF2Q1L5Z9 754 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 METRNLQ641Q3 311 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 TMEM220Q6QAJ8 160 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 LUZP1Q86V48 1076 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 OOSP2Q86WS3 158 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 TMEM126BQ8IUX1 230 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 RHOT2Q8IXI1 618 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 RHOT1Q8IXI2 618 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 CARFQ8N187 725 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 D2HGDHQ8N465 521 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 RASGEF1AQ8N9B8 481 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 OR8K1Q8NGG5 319 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 CPT1CQ8TCG5 803 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 TFB1MQ8WVM0 346 aaKnown RBP8.97□□□□□ -0.97
HDDC3-204ENST00000559834 MR1Q95460 341 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 RNF25Q96BH1 459 aaPredicted RBP8.97□□□□□ -0.97
HDDC3-204ENST00000559834 OLFM3Q96PB7 478 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 VAT1Q99536 393 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 TUBB2BQ9BVA1 445 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 PACSIN1Q9BY11 444 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 ING2Q9H160 280 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 UGT1A7Q9HAW7 530 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 UGT1A10Q9HAW8 530 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 UGT1A8Q9HAW9 530 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 KCND1Q9NSA2 647 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 IMP3Q9NV31 184 aaKnown RBP8.97□□□□□ -0.97
HDDC3-204ENST00000559834 IL17CQ9P0M4 197 aa8.97□□□□□ -0.97
HDDC3-204ENST00000559834 TMPRSS11EQ9UL52 423 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms