RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 RAF1P04049 648 aa3.95□□□□□ -1.78
VPS13C-208ENST00000559119 ICAM1P05362 532 aa3.95□□□□□ -1.78
VPS13C-208ENST00000559119 POLBP06746 335 aa3.95□□□□□ -1.78
VPS13C-208ENST00000559119 HSD3B1P14060 373 aa3.95□□□□□ -1.78
VPS13C-208ENST00000559119 GATA2P23769 480 aaPredicted RBP3.95□□□□□ -1.78
VPS13C-208ENST00000559119 SHC1P29353 583 aa3.95□□□□□ -1.78
VPS13C-208ENST00000559119 RARSP54136 660 aaKnown RBP3.95□□□□□ -1.78
VPS13C-208ENST00000559119 SNX16P57768 344 aa3.95□□□□□ -1.78
VPS13C-208ENST00000559119 KRTAP12-2P59991 146 aa3.95□□□□□ -1.78
VPS13C-208ENST00000559119 MFAP5Q13361 173 aa3.95□□□□□ -1.78
VPS13C-208ENST00000559119 BIRC2Q13490 618 aa3.95□□□□□ -1.78
VPS13C-208ENST00000559119 RRS1Q15050 365 aaKnown RBP3.95□□□□□ -1.78
VPS13C-208ENST00000559119 Q6ZSR9 355 aa3.95□□□□□ -1.78
VPS13C-208ENST00000559119 CCDC190Q86UF4 302 aa3.95□□□□□ -1.78
VPS13C-208ENST00000559119 SMARCE1Q969G3 411 aa3.95□□□□□ -1.78
VPS13C-208ENST00000559119 GCC1Q96CN9 775 aa3.95□□□□□ -1.78
VPS13C-208ENST00000559119 MMABQ96EY8 250 aaPredicted RBP3.95□□□□□ -1.78
VPS13C-208ENST00000559119 UBXN10Q96LJ8 280 aa3.95□□□□□ -1.78
VPS13C-208ENST00000559119 RPS6KC1Q96S38 1066 aa3.95□□□□□ -1.78
VPS13C-208ENST00000559119 PCDHB16Q9NRJ7 776 aa3.95□□□□□ -1.78
VPS13C-208ENST00000559119 CNOT8Q9UFF9 292 aaKnown RBP3.95□□□□□ -1.78
VPS13C-208ENST00000559119 A0A1W2PRG0 241 aa3.94□□□□□ -1.78
VPS13C-208ENST00000559119 ZBTB43O43298 467 aa3.94□□□□□ -1.78
VPS13C-208ENST00000559119 AP2A2O94973 939 aa3.94□□□□□ -1.78
VPS13C-208ENST00000559119 MRPS34P82930 218 aaKnown RBP3.94□□□□□ -1.78
VPS13C-208ENST00000559119 SP3Q02447 781 aa3.94□□□□□ -1.78
VPS13C-208ENST00000559119 FRG1Q14331 258 aaKnown RBP3.94□□□□□ -1.78
VPS13C-208ENST00000559119 KRTAP13-3Q3SY46 172 aa3.94□□□□□ -1.78
VPS13C-208ENST00000559119 TCTEX1D4Q5JR98 221 aa3.94□□□□□ -1.78
VPS13C-208ENST00000559119 SEMA4DQ92854 862 aa3.94□□□□□ -1.78
VPS13C-208ENST00000559119 NR1H4Q96RI1 486 aaPredicted RBP3.94□□□□□ -1.78
VPS13C-208ENST00000559119 PKP2Q99959 881 aa3.94□□□□□ -1.78
VPS13C-208ENST00000559119 RANGRFQ9HD47 186 aaPredicted RBP3.94□□□□□ -1.78
VPS13C-208ENST00000559119 FBXW11Q9UKB1 542 aa3.94□□□□□ -1.78
VPS13C-208ENST00000559119 TEX13DA0A0J9YY54 714 aaPredicted RBP3.93□□□□□ -1.78
VPS13C-208ENST00000559119 OR6C76A6NM76 312 aa3.93□□□□□ -1.78
VPS13C-208ENST00000559119 SLC25A12O75746 678 aa3.93□□□□□ -1.78
VPS13C-208ENST00000559119 CKMT2P17540 419 aa3.93□□□□□ -1.78
VPS13C-208ENST00000559119 TLX1P31314 330 aaPredicted RBP3.93□□□□□ -1.78
VPS13C-208ENST00000559119 CCR10P46092 362 aa3.93□□□□□ -1.78
VPS13C-208ENST00000559119 RIGQ13278 110 aa3.93□□□□□ -1.78
VPS13C-208ENST00000559119 DPCR1Q3MIW9 517 aa3.93□□□□□ -1.78
VPS13C-208ENST00000559119 ZNF774Q6NX45 483 aa3.93□□□□□ -1.78
VPS13C-208ENST00000559119 SLC16A9Q7RTY1 509 aa3.93□□□□□ -1.78
VPS13C-208ENST00000559119 CDC20BQ86Y33 519 aa3.93□□□□□ -1.78
VPS13C-208ENST00000559119 GPALPP1Q8IXQ4 340 aa3.93□□□□□ -1.78
VPS13C-208ENST00000559119 TMEM178AQ8NBL3 297 aa3.93□□□□□ -1.78
VPS13C-208ENST00000559119 MAGED4Q96JG8 741 aa3.93□□□□□ -1.78
VPS13C-208ENST00000559119 STRA6Q9BX79 667 aa3.93□□□□□ -1.78
VPS13C-208ENST00000559119 TP53TG3Q9ULZ0 132 aa3.93□□□□□ -1.78
VPS13C-208ENST00000559119 B3GALT5Q9Y2C3 310 aa3.93□□□□□ -1.78
VPS13C-208ENST00000559119 TMEM184BQ9Y519 407 aaPredicted RBP3.93□□□□□ -1.78
VPS13C-208ENST00000559119 CYP46A1Q9Y6A2 500 aa3.93□□□□□ -1.78
VPS13C-208ENST00000559119 MAP2K7O14733 419 aa3.92□□□□□ -1.78
VPS13C-208ENST00000559119 HRH2P25021 359 aa3.92□□□□□ -1.78
VPS13C-208ENST00000559119 ABCD3P28288 659 aa3.92□□□□□ -1.78
VPS13C-208ENST00000559119 CDH11P55287 796 aa3.92□□□□□ -1.78
VPS13C-208ENST00000559119 HNRNPDQ14103 355 aaKnown RBP3.92□□□□□ -1.78
VPS13C-208ENST00000559119 CCNG2Q16589 344 aa3.92□□□□□ -1.78
VPS13C-208ENST00000559119 SLC9C2Q5TAH2 1124 aa3.92□□□□□ -1.78
VPS13C-208ENST00000559119 CYP26C1Q6V0L0 522 aa3.92□□□□□ -1.78
VPS13C-208ENST00000559119 ERC1Q8IUD2 1116 aa3.92□□□□□ -1.78
VPS13C-208ENST00000559119 ANKRD42Q8N9B4 389 aa3.92□□□□□ -1.78
VPS13C-208ENST00000559119 HTRA1Q92743 480 aa3.92□□□□□ -1.78
VPS13C-208ENST00000559119 SEMA6AQ9H2E6 1030 aa3.92□□□□□ -1.78
VPS13C-208ENST00000559119 PELI2Q9HAT8 420 aa3.92□□□□□ -1.78
VPS13C-208ENST00000559119 EPB41L5Q9HCM4 733 aa3.92□□□□□ -1.78
VPS13C-208ENST00000559119 RCC2Q9P258 522 aaKnown RBP3.92□□□□□ -1.78
VPS13C-208ENST00000559119 CSAG2Q9Y5P2 127 aa3.92□□□□□ -1.78
VPS13C-208ENST00000559119 IGHV4-61A0A0C4DH41 118 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 ZNF197O14709 1029 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 HOXC11O43248 304 aaPredicted RBP3.91□□□□□ -1.78
VPS13C-208ENST00000559119 PLPP2O43688 288 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 PAGE4O60829 102 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 DAB1O75553 588 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 SEC14L2O76054 403 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 IGHV4-59P01825 116 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 FRMD6-AS1P0C7T7 363 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 THOP1P52888 689 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 TAS2R40P59535 323 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 TEAD2Q15562 447 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 ADIPOQQ15848 244 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 CTU2Q2VPK5 515 aaKnown RBP3.91□□□□□ -1.78
VPS13C-208ENST00000559119 SEPT14Q6ZU15 432 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 LMNTD2Q8IXW0 634 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 DNAJC22Q8N4W6 341 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 OR8K5Q8NH50 307 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 FAM149B1Q96BN6 582 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 EGLN2Q96KS0 407 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 PIGQQ9BRB3 760 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 LAT2Q9GZY6 243 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 P2RY12Q9H244 342 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 PCNX3Q9H6A9 2034 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 PPCSQ9HAB8 311 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 OLFML3Q9NRN5 406 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 SLC7A7Q9UM01 511 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 R3HDM2Q9Y2K5 976 aaKnown RBP3.91□□□□□ -1.78
VPS13C-208ENST00000559119 MOB4Q9Y3A3 225 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 AGRNO00468 2067 aa3.91□□□□□ -1.78
VPS13C-208ENST00000559119 OR2M5A3KFT3 312 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms