RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 WWP1Q9H0M0 922 aa12.29□□□□□ -0.44
SMAD3-208ENST00000558827 APMAPQ9HDC9 416 aa12.29□□□□□ -0.44
SMAD3-208ENST00000558827 CRLS1Q9UJA2 301 aa12.29□□□□□ -0.44
SMAD3-208ENST00000558827 GPR89AB7ZAQ6 455 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 HGSO14964 777 aaPredicted RBP12.28□□□□□ -0.44
SMAD3-208ENST00000558827 LDB2O43679 373 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 UBXN7O94888 489 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 CRTAMO95727 393 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 ZSCAN5DPP0CG00 497 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 GPR89BP0CG08 455 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 LIPCP11150 499 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 VCLP18206 1134 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 XRCC1P18887 633 aaPredicted RBP12.28□□□□□ -0.44
SMAD3-208ENST00000558827 MC4RP32245 332 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 GRIA1P42261 906 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 MLLT3P42568 568 aaPredicted RBP12.28□□□□□ -0.44
SMAD3-208ENST00000558827 ZNF140P52738 457 aaPredicted RBP12.28□□□□□ -0.44
SMAD3-208ENST00000558827 TERF1P54274 439 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 GSDMDP57764 484 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 PPP1CAP62136 330 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 SQSTM1Q13501 440 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 TRA2AQ13595 282 aaKnown RBP eCLIP12.28□□□□□ -0.44
SMAD3-208ENST00000558827 LY6DQ14210 128 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 GPR18Q14330 331 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 RPS6KA1Q15418 735 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 RPE65Q16518 533 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 MANEAQ5SRI9 462 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 TMEM164Q5U3C3 297 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 ZDHHC20Q5W0Z9 365 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 IRGCQ6NXR0 463 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 PCSK4Q6UW60 755 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 ABRAXAS1Q6UWZ7 409 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 FAM92BQ6ZTR7 304 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 SLC13A5Q86YT5 568 aaPredicted RBP12.28□□□□□ -0.44
SMAD3-208ENST00000558827 RNF10Q8N5U6 811 aaKnown RBP12.28□□□□□ -0.44
SMAD3-208ENST00000558827 GLIS1Q8NBF1 620 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 DDHD1Q8NEL9 900 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 SPDYE1Q8NFV5 336 aaPredicted RBP12.28□□□□□ -0.44
SMAD3-208ENST00000558827 OR52K1Q8NGK4 314 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 TMEM159Q96B96 161 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 ELMO2Q96JJ3 720 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.28□□□□□ -0.44
SMAD3-208ENST00000558827 IMP3Q9NV31 184 aaKnown RBP12.28□□□□□ -0.44
SMAD3-208ENST00000558827 ZNF148Q9UQR1 794 aa12.28□□□□□ -0.44
SMAD3-208ENST00000558827 TEX51A0A1B0GUA7 166 aa12.27□□□□□ -0.45
SMAD3-208ENST00000558827 OR51F1A6NGY5 319 aa12.27□□□□□ -0.45
SMAD3-208ENST00000558827 PRR19A6NJB7 356 aa12.27□□□□□ -0.45
SMAD3-208ENST00000558827 K7ENP7 123 aa12.27□□□□□ -0.45
SMAD3-208ENST00000558827 CAPN5O15484 640 aaPredicted RBP12.27□□□□□ -0.45
SMAD3-208ENST00000558827 LIASO43766 372 aa12.27□□□□□ -0.45
SMAD3-208ENST00000558827 KRT86O43790 486 aa12.27□□□□□ -0.45
SMAD3-208ENST00000558827 RASSF9O75901 435 aa12.27□□□□□ -0.45
SMAD3-208ENST00000558827 HALP42357 657 aa12.27□□□□□ -0.45
SMAD3-208ENST00000558827 ARCN1P48444 511 aaKnown RBP12.27□□□□□ -0.45
SMAD3-208ENST00000558827 LMAN1P49257 510 aa12.27□□□□□ -0.45
SMAD3-208ENST00000558827 UCNP55089 124 aa12.27□□□□□ -0.45
SMAD3-208ENST00000558827 SH3BP2P78314 561 aa12.27□□□□□ -0.45
SMAD3-208ENST00000558827 FOXM1Q08050 763 aa12.27□□□□□ -0.45
SMAD3-208ENST00000558827 CLPPQ16740 277 aaPredicted RBP12.27□□□□□ -0.45
SMAD3-208ENST00000558827 LONRF2Q1L5Z9 754 aa12.27□□□□□ -0.45
SMAD3-208ENST00000558827 KCTD11Q693B1 232 aa12.27□□□□□ -0.45
SMAD3-208ENST00000558827 INO80CQ6PI98 192 aaPredicted RBP12.27□□□□□ -0.45
SMAD3-208ENST00000558827 WDR74Q6RFH5 385 aaPredicted RBP12.27□□□□□ -0.45
SMAD3-208ENST00000558827 ARHGAP22Q7Z5H3 698 aa12.27□□□□□ -0.45
SMAD3-208ENST00000558827 CFAP206Q8IYR0 622 aa12.27□□□□□ -0.45
SMAD3-208ENST00000558827 DCUN1D1Q96GG9 259 aa12.27□□□□□ -0.45
SMAD3-208ENST00000558827 INSM2Q96T92 566 aaPredicted RBP12.27□□□□□ -0.45
SMAD3-208ENST00000558827 NRTNQ99748 197 aa12.27□□□□□ -0.45
SMAD3-208ENST00000558827 TSGA10Q9BZW7 698 aa12.27□□□□□ -0.45
SMAD3-208ENST00000558827 ZCCHC2Q9C0B9 1178 aaKnown RBP12.27□□□□□ -0.45
SMAD3-208ENST00000558827 ETNK1Q9HBU6 452 aa12.27□□□□□ -0.45
SMAD3-208ENST00000558827 SLC40A1Q9NP59 571 aa12.27□□□□□ -0.45
SMAD3-208ENST00000558827 PCDHB11Q9Y5F2 797 aa12.27□□□□□ -0.45
SMAD3-208ENST00000558827 LILRA5A6NI73 299 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 ATXN7O15265 892 aaPredicted RBP12.26□□□□□ -0.45
SMAD3-208ENST00000558827 ARHGAP6O43182 974 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 SGTAO43765 313 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 PPFIA2O75334 1257 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 ITGALP20701 1170 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 CXCR5P32302 372 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 EPHA4P54764 986 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 GSE1Q14687 1217 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 PLCL1Q15111 1095 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 MEI1Q5TIA1 1274 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 AGAP9Q5VTM2 703 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 FBXO38Q6PIJ6 1188 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 NAPRTQ6XQN6 538 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 SERPINA9Q86WD7 417 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 PLXDC1Q8IUK5 500 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 LRRC8AQ8IWT6 810 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 UNC5BQ8IZJ1 945 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 NXPE1Q8N323 547 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 BMPERQ8N8U9 685 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 DNAAF3Q8N9W5 541 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 C9orf72Q96LT7 481 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 C12orf66Q96MD2 445 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 DPYSL5Q9BPU6 564 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 SEMA4CQ9C0C4 833 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 LRRC40Q9H9A6 602 aa12.26□□□□□ -0.45
SMAD3-208ENST00000558827 PDP2Q9P2J9 529 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms