RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 UHRF1Q96T88 793 aaPredicted RBP11.21□□□□□ -0.61
LDLR-208ENST00000558518 CATSPERBQ9H7T0 1116 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 IPPQ9Y573 584 aa11.21□□□□□ -0.61
LDLR-208ENST00000558518 TNPO2O14787 897 aaKnown RBP11.21□□□□□ -0.62
LDLR-208ENST00000558518 MATN3O15232 486 aa11.21□□□□□ -0.62
LDLR-208ENST00000558518 S1PR4O95977 384 aa11.21□□□□□ -0.62
LDLR-208ENST00000558518 B3GALT4O96024 378 aa11.21□□□□□ -0.62
LDLR-208ENST00000558518 HSD17B1P14061 328 aa11.21□□□□□ -0.62
LDLR-208ENST00000558518 EDNRBP24530 442 aa11.21□□□□□ -0.62
LDLR-208ENST00000558518 AQP1P29972 269 aa11.21□□□□□ -0.62
LDLR-208ENST00000558518 SERPINB10P48595 397 aa11.21□□□□□ -0.62
LDLR-208ENST00000558518 FAM189BP81408 668 aa11.21□□□□□ -0.62
LDLR-208ENST00000558518 RAPSNQ13702 412 aa11.21□□□□□ -0.62
LDLR-208ENST00000558518 KYAT1Q16773 422 aa11.21□□□□□ -0.62
LDLR-208ENST00000558518 FAM174BQ3ZCQ3 159 aa11.21□□□□□ -0.62
LDLR-208ENST00000558518 SPRED1Q7Z699 444 aa11.21□□□□□ -0.62
LDLR-208ENST00000558518 SLC22A15Q8IZD6 547 aa11.21□□□□□ -0.62
LDLR-208ENST00000558518 ATG16L2Q8NAA4 619 aa11.21□□□□□ -0.62
LDLR-208ENST00000558518 OR13J1Q8NGT2 312 aa11.21□□□□□ -0.62
LDLR-208ENST00000558518 OR2T11Q8NH01 316 aa11.21□□□□□ -0.62
LDLR-208ENST00000558518 FCRL5Q96RD9 977 aa11.21□□□□□ -0.62
LDLR-208ENST00000558518 AMBRA1Q9C0C7 1298 aa11.21□□□□□ -0.62
LDLR-208ENST00000558518 CDH7Q9ULB5 785 aa11.21□□□□□ -0.62
LDLR-208ENST00000558518 PCDHA9Q9Y5H5 950 aa11.21□□□□□ -0.62
LDLR-208ENST00000558518 COL2A1P02458 1487 aaPredicted RBP11.2□□□□□ -0.62
LDLR-208ENST00000558518 ZNF99A8MXY4 864 aaPredicted RBP11.2□□□□□ -0.62
LDLR-208ENST00000558518 BCKDKO14874 412 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 ASNA1O43681 348 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 OR1I1O60431 355 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 F9P00740 461 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 LCKP06239 509 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 CD1DP15813 335 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 ACADVLP49748 655 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 NUDT6P53370 316 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 BEX3Q00994 111 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 LCP2Q13094 533 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 SEMA3AQ14563 771 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 ADPRMQ3LIE5 342 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 SOWAHCQ53LP3 525 aaPredicted RBP11.2□□□□□ -0.62
LDLR-208ENST00000558518 SIRPB2Q5JXA9 342 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 SMYD5Q6GMV2 418 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 MRNIPQ6NTE8 343 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 AKAP14Q86UN6 197 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 P2RY8Q86VZ1 359 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 SIX5Q8N196 739 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 CHDHQ8NE62 594 aaPredicted RBP11.2□□□□□ -0.62
LDLR-208ENST00000558518 STON2Q8WXE9 905 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 RPRD1AQ96P16 312 aaPredicted RBP11.2□□□□□ -0.62
LDLR-208ENST00000558518 PRRG3Q9BZD7 231 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 CARS2Q9HA77 564 aaKnown RBP11.2□□□□□ -0.62
LDLR-208ENST00000558518 TRIM39Q9HCM9 518 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 TRMT13Q9NUP7 481 aaKnown RBP11.2□□□□□ -0.62
LDLR-208ENST00000558518 RBPJLQ9UBG7 517 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 SLCO3A1Q9UIG8 710 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 ZNF451Q9Y4E5 1061 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 LRRC37AA6NMS7 1700 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 LOC100130705A0A1B0GUX0 176 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 TREHO43280 583 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 KRT8P05787 483 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 MYL3P08590 195 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 AZGP1P25311 298 aaKnown RBP11.2□□□□□ -0.62
LDLR-208ENST00000558518 EMX1Q04741 257 aaPredicted RBP11.2□□□□□ -0.62
LDLR-208ENST00000558518 AP5B1Q2VPB7 878 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 RAP1GAP2Q684P5 730 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 DCLRE1AQ6PJP8 1040 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.2□□□□□ -0.62
LDLR-208ENST00000558518 MAGEE1Q9HCI5 957 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 EXOSC4Q9NPD3 245 aaKnown RBP11.2□□□□□ -0.62
LDLR-208ENST00000558518 IKZF3Q9UKT9 509 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 ASPDHA6ND91 283 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 F8W810 466 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 SLC1A7O00341 560 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 PIRO00625 290 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 USP2O75604 605 aaPredicted RBP11.2□□□□□ -0.62
LDLR-208ENST00000558518 CHRM5P08912 532 aaPredicted RBP11.2□□□□□ -0.62
LDLR-208ENST00000558518 INHBBP09529 407 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 PFKLP17858 780 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 MASP1P48740 699 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 RAD51Q06609 339 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 THOC7Q6I9Y2 204 aaKnown RBP11.2□□□□□ -0.62
LDLR-208ENST00000558518 ZNF549Q6P9A3 640 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 ANKRD13BQ86YJ7 626 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 ARHGAP12Q8IWW6 846 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 EID3Q8N140 333 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 OR8H2Q8N162 312 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 OR4K2Q8NGD2 314 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 ZBED3Q96IU2 234 aaPredicted RBP11.2□□□□□ -0.62
LDLR-208ENST00000558518 NSMCE3Q96MG7 304 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 LRRC3Q9BY71 257 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 MROH8Q9H579 483 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 SDR39U1Q9NRG7 319 aaPredicted RBP11.2□□□□□ -0.62
LDLR-208ENST00000558518 CATSPERZQ9NTU4 200 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 MYO10Q9HD67 2058 aa11.2□□□□□ -0.62
LDLR-208ENST00000558518 BNIP3LO60238 219 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 CCNCP24863 283 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 ADARB1P78563 741 aaKnown RBP11.19□□□□□ -0.62
LDLR-208ENST00000558518 SKIV2LQ15477 1246 aaKnown RBP11.19□□□□□ -0.62
LDLR-208ENST00000558518 MAPKAPK3Q16644 382 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 ALFQ53S48 1182 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 KRTCAP2Q8N6L1 136 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms