RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 RPS9P46781 194 aaKnown RBP12.72□□□□□ -0.37
LDLR-207ENST00000558013 ENTPD1P49961 510 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 ERVK-8P63133 956 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 LAPTM5Q13571 262 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 GLYATQ6IB77 296 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 GPR141Q7Z602 305 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 ITIH5Q86UX2 942 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 OR4F6Q8NGB9 312 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 OR56A4Q8NGH8 313 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 OR10Q1Q8NGQ4 319 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 LKAAEAR1Q8TD35 194 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 C9orf16Q9BUW7 83 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 NPLQ9BXD5 320 aaPredicted RBP12.72□□□□□ -0.37
LDLR-207ENST00000558013 TM6SF2Q9BZW4 377 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 IKZF5Q9H5V7 419 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 POLR3HQ9Y535 204 aaPredicted RBP12.72□□□□□ -0.37
LDLR-207ENST00000558013 COMMD10Q9Y6G5 202 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 A0A0J9YVX5 310 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 C2orf78A6NCI8 922 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 TMEM189-UBE2V1I3L0A0 370 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 OR7A17O14581 309 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 GIPC1O14908 333 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 KDELR3O43731 214 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 KLK8O60259 260 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 CHEK2O96017 543 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 RHOCP08134 193 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 CORO1AP31146 461 aaKnown RBP12.72□□□□□ -0.37
LDLR-207ENST00000558013 ACLYP53396 1101 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 ADRM1Q16186 407 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 ANKDD1AQ495B1 522 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 ATP6AP1LQ52LC2 224 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 SGO1Q5FBB7 561 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 FAM26DQ5JW98 314 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 SPATA19Q7Z5L4 167 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 SAPCD2Q86UD0 394 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 ERI1Q8IV48 349 aaKnown RBP12.72□□□□□ -0.37
LDLR-207ENST00000558013 ABI1Q8IZP0 508 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 NKAPQ8N5F7 415 aaKnown RBP12.72□□□□□ -0.37
LDLR-207ENST00000558013 HM13Q8TCT9 377 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 MUS81Q96NY9 551 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 BRINP2Q9C0B6 783 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 POLR1BQ9H9Y6 1135 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 SUN2Q9UH99 717 aa12.72□□□□□ -0.37
LDLR-207ENST00000558013 SYN3O14994 580 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 DFNA5O60443 496 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 BMP10O95393 424 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 B3GALT4O96024 378 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 HSPA7P48741 367 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 CLCN7P51798 805 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 FAM189BP81408 668 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 HMGCS1Q01581 520 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 NR6A1Q15406 480 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 TCTN1Q2MV58 587 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 SLC44A4Q53GD3 710 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 FUT10Q6P4F1 479 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 FAM151BQ6UXP7 276 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 MBOAT1Q6ZNC8 495 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 TMEM26Q6ZUK4 368 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 LYSMD3Q7Z3D4 306 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 PTRH1Q86Y79 214 aaKnown RBP12.71□□□□□ -0.37
LDLR-207ENST00000558013 DHRSXQ8N5I4 330 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 DBF4BQ8NFT6 615 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 CXorf21Q9HAI6 301 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 SMPD3Q9NY59 655 aaPredicted RBP12.71□□□□□ -0.37
LDLR-207ENST00000558013 VAPAQ9P0L0 249 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 PCDH10Q9P2E7 1040 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 LEF1Q9UJU2 399 aaPredicted RBP12.71□□□□□ -0.37
LDLR-207ENST00000558013 DNMT3LQ9UJW3 386 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 MOXD2PA6NHM9 499 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 STX16O14662 325 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 MLYCDO95822 493 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 HOXB8P17481 243 aaPredicted RBP12.71□□□□□ -0.37
LDLR-207ENST00000558013 PRKG2Q13237 762 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 NKG7Q16617 165 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 FGD3Q5JSP0 725 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 GOLGA7Q7Z5G4 137 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 DRAXINQ8NBI3 349 aaPredicted RBP12.71□□□□□ -0.37
LDLR-207ENST00000558013 CLHC1Q8NHS4 586 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 ABTB1Q969K4 478 aaPredicted RBP12.71□□□□□ -0.37
LDLR-207ENST00000558013 APOL5Q9BWW9 433 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 SEZ6LQ9BYH1 1024 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 ZFP14Q9HCL3 533 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 ELOVL2Q9NXB9 296 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 RNF186Q9NXI6 227 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 TMCO1Q9UM00 188 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 NEUROG3Q9Y4Z2 214 aa12.71□□□□□ -0.37
LDLR-207ENST00000558013 A0A087WXM4 84 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 A0A1W2PPW3 197 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 UPK1AO00322 258 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 STC2O76061 302 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 LDLRP01130 860 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 ALDH2P05091 517 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 GPIP06744 558 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 TFPTP0C1Z6 253 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 UGT1A1P22309 533 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 UGT1A4P22310 534 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 NFKBIAP25963 317 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 UGT1A3P35503 534 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 UGT1A5P35504 534 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 TUBA4AP68366 448 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms