RNA–Protein interactions for RNA: ENST00000554310.5

SHMT2-211, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 579 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-211ENST00000554310 CLEC14AQ86T13 490 aa12.85□□□□□ -0.35
SHMT2-211ENST00000554310 FBXO39Q8N4B4 442 aa12.85□□□□□ -0.35
SHMT2-211ENST00000554310 RASGEF1AQ8N9B8 481 aa12.85□□□□□ -0.35
SHMT2-211ENST00000554310 ZNF248Q8NDW4 579 aa12.85□□□□□ -0.35
SHMT2-211ENST00000554310 SPATA4Q8NEY3 305 aa12.85□□□□□ -0.35
SHMT2-211ENST00000554310 OR4D9Q8NGE8 314 aa12.85□□□□□ -0.35
SHMT2-211ENST00000554310 OR13C4Q8NGS5 318 aa12.85□□□□□ -0.35
SHMT2-211ENST00000554310 PRR11Q96HE9 360 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-211ENST00000554310 CMKLR1Q99788 373 aa12.85□□□□□ -0.35
SHMT2-211ENST00000554310 ZMYND15Q9H091 742 aa12.85□□□□□ -0.35
SHMT2-211ENST00000554310 UCK1Q9HA47 277 aa12.85□□□□□ -0.35
SHMT2-211ENST00000554310 WASH6PQ9NQA3 447 aa12.85□□□□□ -0.35
SHMT2-211ENST00000554310 PRDM8Q9NQV8 689 aa12.85□□□□□ -0.35
SHMT2-211ENST00000554310 POT1Q9NUX5 634 aa12.85□□□□□ -0.35
SHMT2-211ENST00000554310 AKAP7Q9P0M2 348 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-211ENST00000554310 PAK5Q9P286 719 aa12.85□□□□□ -0.35
SHMT2-211ENST00000554310 CPNE7Q9UBL6 633 aa12.85□□□□□ -0.35
SHMT2-211ENST00000554310 DNAJC16Q9Y2G8 782 aa12.85□□□□□ -0.35
SHMT2-211ENST00000554310 IGSF10Q6WRI0 2623 aa12.85□□□□□ -0.35
SHMT2-211ENST00000554310 ZFHX4Q86UP3 3567 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 TRBV23OR9-2A0A075B6M9 112 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 PMS2P1A4D2B8 440 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 CDRT15L2A8MXV6 281 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 E7EVH7 732 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 H7C0S8 307 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 CEP104O60308 925 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 TNFSF15O95150 251 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 GAS8O95995 478 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 JMJD7P0C870 316 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 THRAP10827 490 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 RALBP11234 206 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 XRCC1P18887 633 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-211ENST00000554310 CXCR5P32302 372 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 CA5AP35218 305 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 CTSCP53634 463 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 C2orf54Q08AI8 447 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 SNX1Q13596 522 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 SEPT6Q14141 434 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 POU6F1Q14863 301 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 SEPT7Q16181 437 aaKnown RBP12.84□□□□□ -0.35
SHMT2-211ENST00000554310 GPR33Q49SQ1 333 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 GLE1Q53GS7 698 aaKnown RBP12.84□□□□□ -0.35
SHMT2-211ENST00000554310 FOXR1Q6PIV2 292 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 ABRAXAS1Q6UWZ7 409 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 USP53Q70EK8 1073 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 AMZ2Q86W34 360 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 ZNF761Q86XN6 746 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-211ENST00000554310 TRIM48Q8IWZ4 208 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 NXPE1Q8N323 547 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 TAB3Q8N5C8 712 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-211ENST00000554310 HEXDCQ8WVB3 486 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 AHCYL2Q96HN2 611 aaKnown RBP12.84□□□□□ -0.35
SHMT2-211ENST00000554310 DNAJC1Q96KC8 554 aaKnown RBP12.84□□□□□ -0.35
SHMT2-211ENST00000554310 SEMA6CQ9H3T2 930 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 HOMER3Q9NSC5 361 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 NLE1Q9NVX2 485 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-211ENST00000554310 CRLS1Q9UJA2 301 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 LHX6Q9UPM6 363 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 PCDHGA7Q9Y5G6 932 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 DNMT3AQ9Y6K1 912 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-211ENST00000554310 SLC30A1Q9Y6M5 507 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 BPTFQ12830 3046 aa12.84□□□□□ -0.35
SHMT2-211ENST00000554310 IGHV5-10-1A0A0J9YXX1 117 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 MROH6A6NGR9 719 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 OR2AG2A6NM03 316 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 CFAP99D6REC4 459 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 VIPP01282 170 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 MC4RP32245 332 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 HALP42357 657 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 LMAN1P49257 510 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 LIMK2P53671 638 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 VSNL1P62760 191 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 TMPRSS15P98073 1019 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 LAMB3Q13751 1172 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 C16orf72Q14CZ0 275 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 COL28A1Q2UY09 1125 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 BCL7AQ4VC05 210 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 BEND6Q5SZJ8 279 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-211ENST00000554310 FNBP1LQ5T0N5 605 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 NKAIN2Q5VXU1 208 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 TMEM71Q6P5X7 295 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 TMEM220Q6QAJ8 160 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 WDR74Q6RFH5 385 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-211ENST00000554310 C4orf22Q6V702 233 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 PPP1R21Q6ZMI0 780 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 RBM12BQ8IXT5 1001 aaKnown RBP12.83□□□□□ -0.36
SHMT2-211ENST00000554310 DNAAF3Q8N9W5 541 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 OR52K1Q8NGK4 314 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 ACTRT1Q8TDG2 376 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 STYXQ8WUJ0 223 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 KCNE4Q8WWG9 221 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 CCDC97Q96F63 343 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-211ENST00000554310 DCUN1D1Q96GG9 259 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 CCDC74BQ96LY2 380 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 COPS8Q99627 209 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 ETNK1Q9HBU6 452 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 EIF2B3Q9NR50 452 aaKnown RBP12.83□□□□□ -0.36
SHMT2-211ENST00000554310 RAB6BQ9NRW1 208 aa12.83□□□□□ -0.36
SHMT2-211ENST00000554310 SCHIP1Q9P0W5 487 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-211ENST00000554310 PISDQ9UG56 409 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms