RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 KRT75O95678 551 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 APODP05090 189 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 TCN1P20061 433 aaPredicted RBP7.59□□□□□ -1.19
LIMA1-216ENST00000552909 ARRB2P32121 409 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 DGKGP49619 791 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 NUMBP49757 651 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 CBLBQ13191 982 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 PDK2Q15119 407 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 FBXO43Q4G163 708 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 TIGD2Q4W5G0 525 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 AGAP7PQ5VUJ5 663 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 TMEM215Q68D42 235 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 HEATR6Q6AI08 1181 aaKnown RBP7.59□□□□□ -1.19
LIMA1-216ENST00000552909 ATG14Q6ZNE5 492 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 ZBTB49Q6ZSB9 765 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 ZC3H7AQ8IWR0 971 aaKnown RBP7.59□□□□□ -1.19
LIMA1-216ENST00000552909 PYROXD2Q8N2H3 581 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 TXNDC5Q8NBS9 432 aaKnown RBP7.59□□□□□ -1.19
LIMA1-216ENST00000552909 RNF34Q969K3 372 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 ASB9Q96DX5 294 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 CEP44Q9C0F1 390 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 NAA50Q9GZZ1 169 aaKnown RBP7.59□□□□□ -1.19
LIMA1-216ENST00000552909 EFCAB1Q9HAE3 211 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 DCDC2Q9UHG0 476 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 FBXO4Q9UKT5 387 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 SPEGQ15772 3267 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 ABCA7Q8IZY2 2146 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 CHURC1-FNTBB4DL54 471 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 STX16-NPEPL1H3BU86 382 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 APOC4-APOC2K7ER74 178 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 AKAP10O43572 662 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 TBL1XO60907 577 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 RSL1D1O76021 490 aaKnown RBP7.59□□□□□ -1.2
LIMA1-216ENST00000552909 MYO1DO94832 1006 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 SEC24DO94855 1032 aaPredicted RBP7.59□□□□□ -1.2
LIMA1-216ENST00000552909 VAPBO95292 243 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 HSPA4LO95757 839 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 CHEK2O96017 543 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 F9P00740 461 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 APOC2P02655 101 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 MYF6P23409 242 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 IL4RP24394 825 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 HLA-FP30511 346 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 DPP6P42658 865 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 WASP42768 502 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 SLC11A2P49281 568 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 SLC10A2Q12908 348 aaPredicted RBP7.59□□□□□ -1.2
LIMA1-216ENST00000552909 PTK2BQ14289 1009 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 RFTN1Q14699 578 aaPredicted RBP7.59□□□□□ -1.2
LIMA1-216ENST00000552909 ZNF846Q147U1 533 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 MPPE1Q53F39 396 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 RAP1GAP2Q684P5 730 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 SLC9A4Q6AI14 798 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 PPP4R4Q6NUP7 873 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 DARS2Q6PI48 645 aaKnown RBP7.59□□□□□ -1.2
LIMA1-216ENST00000552909 TMEM92Q6UXU6 159 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 UNC5AQ6ZN44 842 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 BNIPLQ7Z465 357 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 MMAAQ8IVH4 418 aaKnown RBP7.59□□□□□ -1.2
LIMA1-216ENST00000552909 ATP6V0D2Q8N8Y2 350 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 CALML6Q8TD86 181 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 SORCS1Q8WY21 1168 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 NELL1Q92832 810 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 CNDP2Q96KP4 475 aaKnown RBP7.59□□□□□ -1.2
LIMA1-216ENST00000552909 BTN2A3PQ96KV6 586 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 HHIPQ96QV1 700 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 OR52B2Q96RD2 323 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 ZNF347Q96SE7 839 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 TUBA1CQ9BQE3 449 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 EFHD1Q9BUP0 239 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 TRIM62Q9BVG3 475 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 MRPL46Q9H2W6 279 aaKnown RBP7.59□□□□□ -1.2
LIMA1-216ENST00000552909 WDCPQ9H6R7 721 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 MRPL40Q9NQ50 206 aaKnown RBP7.59□□□□□ -1.2
LIMA1-216ENST00000552909 RAB6BQ9NRW1 208 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 ANKMY1Q9P2S6 941 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 COPG2Q9UBF2 871 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 POU2F3Q9UKI9 436 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 FZD10Q9ULW2 581 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 AP4E1Q9UPM8 1137 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 TMA7Q9Y2S6 64 aaKnown RBP7.59□□□□□ -1.2
LIMA1-216ENST00000552909 SNX10Q9Y5X0 201 aa7.59□□□□□ -1.2
LIMA1-216ENST00000552909 SPTBN4Q9H254 2564 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 EML5Q05BV3 1969 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 NOTOA8MTQ0 251 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.58□□□□□ -1.2
LIMA1-216ENST00000552909 KLF8O95600 359 aaPredicted RBP7.58□□□□□ -1.2
LIMA1-216ENST00000552909 LATS1O95835 1130 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 CYBBP04839 570 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 CD1EP15812 388 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 MX2P20592 715 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 CCR1P32246 355 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 ADRA1BP35368 520 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 TNFRSF4P43489 277 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 FNTBP49356 437 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 NRLP54845 237 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 TMBIM6P55061 237 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 NME5P56597 212 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 ATP6V0D1P61421 351 aa7.58□□□□□ -1.2
LIMA1-216ENST00000552909 RHDQ02161 417 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 1294.5 ms