RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 CCR3P51677 355 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 MFAP4P55083 255 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 CSTF3Q12996 717 aaKnown RBP3.85□□□□□ -1.79
LIMA1-208ENST00000551691 RUNX2Q13950 521 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 MFSD13AQ14CX5 517 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 CYP1B1Q16678 543 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 ANXA2RQ3ZCQ2 193 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 TIGD2Q4W5G0 525 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 ARL13AQ5H913 290 aaPredicted RBP3.85□□□□□ -1.79
LIMA1-208ENST00000551691 TCP11X2Q5H9J9 407 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 ZNF667Q5HYK9 610 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 RAB41Q5JT25 222 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 CLLU1OSQ5K130 101 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 UBAP2Q5T6F2 1119 aaKnown RBP3.85□□□□□ -1.79
LIMA1-208ENST00000551691 RPUSD3Q6P087 351 aaKnown RBP3.85□□□□□ -1.79
LIMA1-208ENST00000551691 GJB7Q6PEY0 223 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 SHQ1Q6PI26 577 aaKnown RBP3.85□□□□□ -1.79
LIMA1-208ENST00000551691 TMEM65Q6PI78 240 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 PET117Q6UWS5 81 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 DHRS13Q6UX07 377 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 CCNI2Q6ZMN8 369 aaPredicted RBP3.85□□□□□ -1.79
LIMA1-208ENST00000551691 C15orf39Q6ZRI6 1047 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 SLC24A5Q71RS6 500 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 ZNF551Q7Z340 670 aaPredicted RBP3.85□□□□□ -1.79
LIMA1-208ENST00000551691 CACNA2D4Q7Z3S7 1137 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 RNF144BQ7Z419 303 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 GRASPQ7Z6J2 395 aaPredicted RBP3.85□□□□□ -1.79
LIMA1-208ENST00000551691 DNAJB7Q7Z6W7 309 aaPredicted RBP3.85□□□□□ -1.79
LIMA1-208ENST00000551691 SLFN11Q7Z7L1 901 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 KLBQ86Z14 1044 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 SFTPA1Q8IWL2 248 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 POGLUT1Q8NBL1 392 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 BEND2Q8NDZ0 799 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 NSMCE1Q8WV22 266 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 PRPF31Q8WWY3 499 aaKnown RBP3.85□□□□□ -1.79
LIMA1-208ENST00000551691 PRR11Q96HE9 360 aaPredicted RBP3.85□□□□□ -1.79
LIMA1-208ENST00000551691 C1orf74Q96LT6 269 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 GPR78Q96P69 363 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 FYTTD1Q96QD9 318 aaKnown RBP3.85□□□□□ -1.79
LIMA1-208ENST00000551691 NPAS1Q99742 590 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 HEMGNQ9BXL5 484 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 FTHL17Q9BXU8 183 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 EDEM3Q9BZQ6 932 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 TRIM4Q9C037 500 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 FZD8Q9H461 694 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 SNTG1Q9NSN8 517 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 C20orf141Q9NUB4 165 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 SLCO3A1Q9UIG8 710 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 HAO1Q9UJM8 370 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 B3GNT3Q9Y2A9 372 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 AAR2Q9Y312 384 aaKnown RBP3.85□□□□□ -1.79
LIMA1-208ENST00000551691 NRCAMQ92823 1304 aa3.85□□□□□ -1.79
LIMA1-208ENST00000551691 SETD2Q9BYW2 2564 aaPredicted RBP3.85□□□□□ -1.79
LIMA1-208ENST00000551691 POLQO75417 2590 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 GREB1LQ9C091 1923 aaPredicted RBP3.84□□□□□ -1.79
LIMA1-208ENST00000551691 KAT6AQ92794 2004 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 LRBAP50851 2863 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 hCG_1809904A0A1W2PP81 198 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 A0A1W2PPE2 198 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 A0A1W2PR64 198 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 BICDL2A1A5D9 508 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 OR6C68A6NDL8 312 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 AHRRA9YTQ3 701 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 TGFB1I1O43294 461 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 SURF6O75683 361 aaKnown RBP3.84□□□□□ -1.79
LIMA1-208ENST00000551691 CNTN5O94779 1100 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 NUDT3O95989 172 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 ADRB2P07550 413 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 GOLGA8HP0CJ92 632 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 TGM2P21980 687 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 MUTP22033 750 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 PROZP22891 400 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 CCNE1P24864 410 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 LMO1P25800 156 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 ATP6V1E1P36543 226 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 EIF2S3P41091 472 aaKnown RBP3.84□□□□□ -1.79
LIMA1-208ENST00000551691 STAT6P42226 847 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 SLC15A1P46059 708 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 MTNR1AP48039 350 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 ALDH7A1P49419 539 aaKnown RBP3.84□□□□□ -1.79
LIMA1-208ENST00000551691 BLKP51451 505 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 CYP2J2P51589 502 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 EEFSECP57772 596 aaKnown RBP3.84□□□□□ -1.79
LIMA1-208ENST00000551691 KRT83P78385 493 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 PPARDQ03181 441 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 NIPAL4Q0D2K0 466 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 LMAN2Q12907 356 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 KCNB1Q14721 858 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 ASIC2Q16515 512 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 BEAN1Q3B7T3 259 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 FAM153CQ494X1 144 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 C9orf152Q5JTZ5 239 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 SERTAD4-AS1Q5TG53 156 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 HMBOX1Q6NT76 420 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 AADACL2Q6P093 401 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 MTFR2Q6P444 385 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 SLC30A9Q6PML9 568 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 CPLX2Q6PUV4 134 aaKnown RBP3.84□□□□□ -1.79
LIMA1-208ENST00000551691 VSTM1Q6UX27 236 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 KYAT3Q6YP21 454 aaKnown RBP3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms