RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 OR56A5P0C7T3 313 aa20.86■□□□□ 0.93
VPS29-206ENST00000549578 ITGB6P18564 788 aa20.86■□□□□ 0.93
VPS29-206ENST00000549578 DGKAP23743 735 aa20.86■□□□□ 0.93
VPS29-206ENST00000549578 AK4P27144 223 aaPredicted RBP20.86■□□□□ 0.93
VPS29-206ENST00000549578 CTBSQ01459 385 aa20.86■□□□□ 0.93
VPS29-206ENST00000549578 AASDHQ4L235 1098 aaPredicted RBP20.86■□□□□ 0.93
VPS29-206ENST00000549578 SLC26A11Q86WA9 606 aa20.86■□□□□ 0.93
VPS29-206ENST00000549578 LRRC6Q86X45 466 aa20.86■□□□□ 0.93
VPS29-206ENST00000549578 GATAD2AQ86YP4 633 aa20.86■□□□□ 0.93
VPS29-206ENST00000549578 LKAAEAR1Q8TD35 194 aa20.86■□□□□ 0.93
VPS29-206ENST00000549578 CAVIN3Q969G5 261 aa20.86■□□□□ 0.93
VPS29-206ENST00000549578 SPASTQ9UBP0 616 aa20.86■□□□□ 0.93
VPS29-206ENST00000549578 FAM8A1Q9UBU6 413 aa20.86■□□□□ 0.93
VPS29-206ENST00000549578 GNPTGQ9UJJ9 305 aa20.86■□□□□ 0.93
VPS29-206ENST00000549578 DNAJC16Q9Y2G8 782 aa20.86■□□□□ 0.93
VPS29-206ENST00000549578 A0A087WUV0 522 aaPredicted RBP20.85■□□□□ 0.93
VPS29-206ENST00000549578 CDX4O14627 284 aaPredicted RBP20.85■□□□□ 0.93
VPS29-206ENST00000549578 AQP9O43315 295 aa20.85■□□□□ 0.93
VPS29-206ENST00000549578 ESR1P03372 595 aa20.85■□□□□ 0.93
VPS29-206ENST00000549578 ABHD2P08910 425 aa20.85■□□□□ 0.93
VPS29-206ENST00000549578 CD151P48509 253 aa20.85■□□□□ 0.93
VPS29-206ENST00000549578 ADARP55265 1226 aaKnown RBP20.85■□□□□ 0.93
VPS29-206ENST00000549578 ILF3Q12906 894 aaKnown RBP eCLIP20.85■□□□□ 0.93
VPS29-206ENST00000549578 SLC29A2Q14542 456 aa20.85■□□□□ 0.93
VPS29-206ENST00000549578 UAP1Q16222 522 aaPredicted RBP20.85■□□□□ 0.93
VPS29-206ENST00000549578 ZNF549Q6P9A3 640 aa20.85■□□□□ 0.93
VPS29-206ENST00000549578 GALNT7Q86SF2 657 aa20.85■□□□□ 0.93
VPS29-206ENST00000549578 KRT222Q8N1A0 295 aa20.85■□□□□ 0.93
VPS29-206ENST00000549578 MRRFQ96E11 262 aaKnown RBP20.85■□□□□ 0.93
VPS29-206ENST00000549578 ATXN7L3BQ96GX2 97 aa20.85■□□□□ 0.93
VPS29-206ENST00000549578 CYTH2Q99418 400 aa20.85■□□□□ 0.93
VPS29-206ENST00000549578 KLC4Q9NSK0 619 aa20.85■□□□□ 0.93
VPS29-206ENST00000549578 NSMCE4AQ9NXX6 385 aa20.85■□□□□ 0.93
VPS29-206ENST00000549578 PCDHB1Q9Y5F3 818 aa20.85■□□□□ 0.93
VPS29-206ENST00000549578 YKT6O15498 198 aa20.84■□□□□ 0.93
VPS29-206ENST00000549578 GFRA3O60609 400 aa20.84■□□□□ 0.93
VPS29-206ENST00000549578 NIPSNAP2O75323 286 aa20.84■□□□□ 0.93
VPS29-206ENST00000549578 FAM155BO75949 473 aa20.84■□□□□ 0.93
VPS29-206ENST00000549578 TRIM16O95361 564 aa20.84■□□□□ 0.93
VPS29-206ENST00000549578 PKMP14618 531 aaKnown RBP20.84■□□□□ 0.93
VPS29-206ENST00000549578 LRP8Q14114 963 aa20.84■□□□□ 0.93
VPS29-206ENST00000549578 SLC30A9Q6PML9 568 aa20.84■□□□□ 0.93
VPS29-206ENST00000549578 AMZ2Q86W34 360 aa20.84■□□□□ 0.93
VPS29-206ENST00000549578 NRROSQ86YC3 692 aa20.84■□□□□ 0.93
VPS29-206ENST00000549578 SLC25A45Q8N413 288 aa20.84■□□□□ 0.93
VPS29-206ENST00000549578 FSTL5Q8N475 847 aaPredicted RBP20.84■□□□□ 0.93
VPS29-206ENST00000549578 GPBAR1Q8TDU6 330 aa20.84■□□□□ 0.93
VPS29-206ENST00000549578 SAP25Q8TEE9 199 aa20.84■□□□□ 0.93
VPS29-206ENST00000549578 FAM136AQ96C01 138 aa20.84■□□□□ 0.93
VPS29-206ENST00000549578 LINC00615Q96LM1 132 aaPredicted RBP20.84■□□□□ 0.93
VPS29-206ENST00000549578 NDNQ99608 321 aa20.84■□□□□ 0.93
VPS29-206ENST00000549578 TIMM29Q9BSF4 260 aa20.84■□□□□ 0.93
VPS29-206ENST00000549578 CCM2Q9BSQ5 444 aa20.84■□□□□ 0.93
VPS29-206ENST00000549578 TXNDC16Q9P2K2 825 aa20.84■□□□□ 0.93
VPS29-206ENST00000549578 GULP1Q9UBP9 304 aa20.84■□□□□ 0.93
VPS29-206ENST00000549578 QSOX1O00391 747 aa20.83■□□□□ 0.93
VPS29-206ENST00000549578 GDF9O60383 454 aa20.83■□□□□ 0.93
VPS29-206ENST00000549578 FTH1P02794 183 aa20.83■□□□□ 0.93
VPS29-206ENST00000549578 HSD17B3P37058 310 aa20.83■□□□□ 0.93
VPS29-206ENST00000549578 ACTR1BP42025 376 aa20.83■□□□□ 0.93
VPS29-206ENST00000549578 ACTR1AP61163 376 aa20.83■□□□□ 0.93
VPS29-206ENST00000549578 ELOCQ15369 112 aa20.83■□□□□ 0.93
VPS29-206ENST00000549578 RBM20Q5T481 1227 aaKnown RBP20.83■□□□□ 0.93
VPS29-206ENST00000549578 NAPRTQ6XQN6 538 aa20.83■□□□□ 0.93
VPS29-206ENST00000549578 KANSL1Q7Z3B3 1105 aa20.83■□□□□ 0.93
VPS29-206ENST00000549578 TAF8Q7Z7C8 310 aa20.83■□□□□ 0.93
VPS29-206ENST00000549578 ZC3HC1Q86WB0 502 aaKnown RBP20.83■□□□□ 0.93
VPS29-206ENST00000549578 CPNE1Q99829 537 aa20.83■□□□□ 0.93
VPS29-206ENST00000549578 GSDMCQ9BYG8 508 aa20.83■□□□□ 0.93
VPS29-206ENST00000549578 CCDC68Q9H2F9 335 aa20.83■□□□□ 0.93
VPS29-206ENST00000549578 OSGEPL1Q9H4B0 414 aa20.83■□□□□ 0.93
VPS29-206ENST00000549578 TMEM9BQ9NQ34 198 aa20.83■□□□□ 0.93
VPS29-206ENST00000549578 DNAAF2Q9NVR5 837 aaKnown RBP20.83■□□□□ 0.93
VPS29-206ENST00000549578 DNMT3AQ9Y6K1 912 aaPredicted RBP20.83■□□□□ 0.93
VPS29-206ENST00000549578 ZNF292O60281 2723 aa20.83■□□□□ 0.92
VPS29-206ENST00000549578 MGAT4DA6NG13 374 aa20.83■□□□□ 0.92
VPS29-206ENST00000549578 FFAR2O15552 330 aa20.83■□□□□ 0.92
VPS29-206ENST00000549578 GP5P40197 560 aa20.83■□□□□ 0.92
VPS29-206ENST00000549578 ARHGAP8P85298 464 aa20.83■□□□□ 0.92
VPS29-206ENST00000549578 NAB1Q13506 487 aa20.83■□□□□ 0.92
VPS29-206ENST00000549578 NFE2L1Q14494 772 aa20.83■□□□□ 0.92
VPS29-206ENST00000549578 MAP9Q49MG5 647 aa20.83■□□□□ 0.92
VPS29-206ENST00000549578 FAM83HQ6ZRV2 1179 aaPredicted RBP20.83■□□□□ 0.92
VPS29-206ENST00000549578 LILRA3Q8N6C8 439 aaPredicted RBP20.83■□□□□ 0.92
VPS29-206ENST00000549578 OR2L2Q8NH16 312 aa20.83■□□□□ 0.92
VPS29-206ENST00000549578 ELMO1Q92556 727 aa20.83■□□□□ 0.92
VPS29-206ENST00000549578 MCMBPQ9BTE3 642 aa20.83■□□□□ 0.92
VPS29-206ENST00000549578 AARSD1Q9BTE6 412 aaKnown RBP20.83■□□□□ 0.92
VPS29-206ENST00000549578 ZFC3H1O60293 1989 aaKnown RBP20.82■□□□□ 0.92
VPS29-206ENST00000549578 FAM186AA6NE01 2351 aa20.82■□□□□ 0.92
VPS29-206ENST00000549578 F8W8V4 182 aa20.82■□□□□ 0.92
VPS29-206ENST00000549578 KLHL38Q2WGJ6 581 aa20.82■□□□□ 0.92
VPS29-206ENST00000549578 DEFB133Q30KQ1 61 aa20.82■□□□□ 0.92
VPS29-206ENST00000549578 XKR5Q6UX68 686 aa20.82■□□□□ 0.92
VPS29-206ENST00000549578 SPNS2Q8IVW8 549 aa20.82■□□□□ 0.92
VPS29-206ENST00000549578 GPATCH11Q8N954 259 aa20.82■□□□□ 0.92
VPS29-206ENST00000549578 RHOJQ9H4E5 214 aa20.82■□□□□ 0.92
VPS29-206ENST00000549578 SARS2Q9NP81 518 aaKnown RBP20.82■□□□□ 0.92
VPS29-206ENST00000549578 DOLKQ9UPQ8 538 aa20.82■□□□□ 0.92
VPS29-206ENST00000549578 MED16Q9Y2X0 877 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms