RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 CNDP2Q96KP4 475 aaKnown RBP13.55□□□□□ -0.24
PTCH1-213ENST00000546820 OSGEPL1Q9H4B0 414 aa13.55□□□□□ -0.24
PTCH1-213ENST00000546820 IARS2Q9NSE4 1012 aaKnown RBP13.55□□□□□ -0.24
PTCH1-213ENST00000546820 SPATS2LQ9NUQ6 558 aaKnown RBP13.55□□□□□ -0.24
PTCH1-213ENST00000546820 GULP1Q9UBP9 304 aa13.55□□□□□ -0.24
PTCH1-213ENST00000546820 SLC23A2Q9UGH3 650 aa13.55□□□□□ -0.24
PTCH1-213ENST00000546820 GNPTGQ9UJJ9 305 aa13.55□□□□□ -0.24
PTCH1-213ENST00000546820 ACSL5Q9ULC5 683 aa13.55□□□□□ -0.24
PTCH1-213ENST00000546820 KCNK6Q9Y257 313 aa13.55□□□□□ -0.24
PTCH1-213ENST00000546820 BTBD3Q9Y2F9 522 aa13.55□□□□□ -0.24
PTCH1-213ENST00000546820 PLEKHM1Q9Y4G2 1056 aa13.55□□□□□ -0.24
PTCH1-213ENST00000546820 PCDHB1Q9Y5F3 818 aa13.55□□□□□ -0.24
PTCH1-213ENST00000546820 USP34Q70CQ2 3546 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 ASCC3Q8N3C0 2202 aaKnown RBP13.54□□□□□ -0.24
PTCH1-213ENST00000546820 UBA6A0AVT1 1052 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-213ENST00000546820 TNFSF14O43557 240 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 OR1I1O60431 355 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 SNX2O60749 519 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 SPAG6O75602 509 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 GIMD1P0DJR0 217 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 CEACAM1P13688 526 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 CKMT2P17540 419 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 RPS3P23396 243 aaKnown RBP eCLIP13.54□□□□□ -0.24
PTCH1-213ENST00000546820 ADARP55265 1226 aaKnown RBP13.54□□□□□ -0.24
PTCH1-213ENST00000546820 DAB2P98082 770 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 PLOD1Q02809 727 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-213ENST00000546820 MGAT5Q09328 741 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 BIRC2Q13490 618 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 SLMAPQ14BN4 828 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 FASTKD3Q14CZ7 662 aaKnown RBP13.54□□□□□ -0.24
PTCH1-213ENST00000546820 TRIP6Q15654 476 aaKnown RBP13.54□□□□□ -0.24
PTCH1-213ENST00000546820 KIAA0408Q6ZU52 694 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 C11orf96Q7Z7L8 435 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 CFAP206Q8IYR0 622 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 ARL10Q8N8L6 244 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 LRRN4CLQ8ND94 238 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 ZDHHC1Q8WTX9 485 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 UBXN4Q92575 508 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 CDKL2Q92772 493 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 APOLD1Q96LR9 279 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 CAMK1GQ96NX5 476 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 PANX3Q96QZ0 392 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 CCDC68Q9H2F9 335 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 CAAP1Q9H8G2 361 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 NSMCE4AQ9NXX6 385 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 IL1RAPL1Q9NZN1 696 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 ZFATQ9P243 1243 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 FBXO5Q9UKT4 447 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 DNAJC16Q9Y2G8 782 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 PCYT1BQ9Y5K3 369 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-213ENST00000546820 GVINP1Q7Z2Y8 2422 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 PLXNB3Q9ULL4 1909 aa13.54□□□□□ -0.24
PTCH1-213ENST00000546820 PIEZO1Q92508 2521 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 LRP4O75096 1905 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 KPNA5O15131 536 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 ZW10O43264 779 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 SGTAO43765 313 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 CBFA2T3O75081 653 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 S1PR4O95977 384 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 ESR1P03372 595 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 PBLDP30039 288 aaPredicted RBP13.53□□□□□ -0.24
PTCH1-213ENST00000546820 FMO4P31512 558 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 PHBP35232 272 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 HALP42357 657 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 DMPKQ09013 629 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 ILF2Q12905 390 aaKnown RBP13.53□□□□□ -0.24
PTCH1-213ENST00000546820 CTBP1Q13363 440 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 PUM1Q14671 1186 aaKnown RBP eCLIP13.53□□□□□ -0.24
PTCH1-213ENST00000546820 NR0B2Q15466 257 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 SMAD1Q15797 465 aaKnown RBP13.53□□□□□ -0.24
PTCH1-213ENST00000546820 METRNLQ641Q3 311 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 WASH2PQ6VEQ5 465 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 MICALCLQ6ZW33 695 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 RELL1Q8IUW5 271 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 AVL9Q8NBF6 648 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 C2CD4AQ8NCU7 369 aaPredicted RBP13.53□□□□□ -0.24
PTCH1-213ENST00000546820 DEFB124Q8NES8 71 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 HM13Q8TCT9 377 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.53□□□□□ -0.24
PTCH1-213ENST00000546820 C9orf72Q96LT7 481 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 WDR83Q9BRX9 315 aaKnown RBP13.53□□□□□ -0.24
PTCH1-213ENST00000546820 STN1Q9H668 368 aaKnown RBP13.53□□□□□ -0.24
PTCH1-213ENST00000546820 WASH6PQ9NQA3 447 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 MOCS1Q9NZB8 636 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 SIRPGQ9P1W8 387 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 TBC1D29Q9UFV1 150 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 PADI4Q9UM07 663 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 NFU1Q9UMS0 254 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 CRYL1Q9Y2S2 319 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 COMMD10Q9Y6G5 202 aa13.53□□□□□ -0.24
PTCH1-213ENST00000546820 KIR2DS5A0A0G2JLQ3 304 aa13.52□□□□□ -0.25
PTCH1-213ENST00000546820 A0A0G2JNG1 304 aa13.52□□□□□ -0.25
PTCH1-213ENST00000546820 PDZK1P1A8MUH7 402 aa13.52□□□□□ -0.25
PTCH1-213ENST00000546820 B4DGG1 531 aa13.52□□□□□ -0.25
PTCH1-213ENST00000546820 KIR2DS3K7RE56 304 aa13.52□□□□□ -0.25
PTCH1-213ENST00000546820 LIN7AO14910 233 aaPredicted RBP13.52□□□□□ -0.25
PTCH1-213ENST00000546820 TRIM16O95361 564 aa13.52□□□□□ -0.25
PTCH1-213ENST00000546820 CDK4P11802 303 aa13.52□□□□□ -0.25
PTCH1-213ENST00000546820 CKMT1AP12532 417 aa13.52□□□□□ -0.25
PTCH1-213ENST00000546820 F3P13726 295 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms