RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 TOE1Q96GM8 510 aaKnown RBP9.4□□□□□ -0.9
YBX3-215ENST00000544504 HIC2Q96JB3 615 aa9.4□□□□□ -0.9
YBX3-215ENST00000544504 AARSD1Q9BTE6 412 aaKnown RBP9.4□□□□□ -0.9
YBX3-215ENST00000544504 IQCGQ9H095 443 aaKnown RBP9.4□□□□□ -0.9
YBX3-215ENST00000544504 FAM96AQ9H5X1 160 aa9.4□□□□□ -0.9
YBX3-215ENST00000544504 WDR26Q9H7D7 661 aa9.4□□□□□ -0.9
YBX3-215ENST00000544504 CNOT10Q9H9A5 744 aaKnown RBP9.4□□□□□ -0.9
YBX3-215ENST00000544504 SYTL2Q9HCH5 934 aa9.4□□□□□ -0.9
YBX3-215ENST00000544504 MKS1Q9NXB0 559 aa9.4□□□□□ -0.9
YBX3-215ENST00000544504 KLHL42Q9P2K6 505 aa9.4□□□□□ -0.9
YBX3-215ENST00000544504 SLC17A6Q9P2U8 582 aa9.4□□□□□ -0.9
YBX3-215ENST00000544504 CTNNAL1Q9UBT7 734 aa9.4□□□□□ -0.9
YBX3-215ENST00000544504 DCDC2Q9UHG0 476 aa9.4□□□□□ -0.9
YBX3-215ENST00000544504 SLC39A10Q9ULF5 831 aa9.4□□□□□ -0.9
YBX3-215ENST00000544504 CYP8B1Q9UNU6 501 aa9.4□□□□□ -0.9
YBX3-215ENST00000544504 ZFR2Q9UPR6 939 aaKnown RBP9.4□□□□□ -0.9
YBX3-215ENST00000544504 CRYL1Q9Y2S2 319 aa9.4□□□□□ -0.9
YBX3-215ENST00000544504 COQ6Q9Y2Z9 468 aa9.4□□□□□ -0.9
YBX3-215ENST00000544504 IGHV1OR15-9A0A0B4J2B8 117 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 CCDC189A1A4V9 331 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 PRAMEF26H0Y7S4 382 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 CACNB4O00305 520 aaPredicted RBP9.39□□□□□ -0.91
YBX3-215ENST00000544504 GLRA3O75311 464 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 PAK4O96013 591 aaPredicted RBP9.39□□□□□ -0.91
YBX3-215ENST00000544504 FTH1P02794 183 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 ATP1B2P14415 290 aaPredicted RBP9.39□□□□□ -0.91
YBX3-215ENST00000544504 ENGP17813 658 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 FMO4P31512 558 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 TRIM23P36406 574 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 CCNFP41002 786 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 DPP6P42658 865 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 MAGEA12P43365 314 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 DHPSP49366 369 aaPredicted RBP9.39□□□□□ -0.91
YBX3-215ENST00000544504 CDKN1CP49918 316 aaPredicted RBP9.39□□□□□ -0.91
YBX3-215ENST00000544504 SLC18A1P54219 525 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 MAGOHP61326 146 aaKnown RBP9.39□□□□□ -0.91
YBX3-215ENST00000544504 YPEL5P62699 121 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 SLC18A2Q05940 514 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 PDAP1Q13442 181 aaKnown RBP9.39□□□□□ -0.91
YBX3-215ENST00000544504 BMPR2Q13873 1038 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 IRF4Q15306 451 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 SEPT7Q16181 437 aaKnown RBP9.39□□□□□ -0.91
YBX3-215ENST00000544504 INSCQ1MX18 579 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 TSNAXIP1Q2TAA8 658 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 WSCD2Q2TBF2 565 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 TTLL9Q3SXZ7 439 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 HECTD2Q5U5R9 776 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 LRRC8EQ6NSJ5 796 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 KLC3Q6P597 504 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 RFLNAQ6ZTI6 216 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 RAPH1Q70E73 1250 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 TBC1D1Q86TI0 1168 aaPredicted RBP9.39□□□□□ -0.91
YBX3-215ENST00000544504 LDB1Q86U70 411 aaPredicted RBP9.39□□□□□ -0.91
YBX3-215ENST00000544504 CYP4X1Q8N118 509 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 TP53I13Q8NBR0 393 aaPredicted RBP9.39□□□□□ -0.91
YBX3-215ENST00000544504 MZB1Q8WU39 189 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 FOXJ1Q92949 421 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 ATXN7L3BQ96GX2 97 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 TEX101Q9BY14 249 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 P2RY12Q9H244 342 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 RMI1Q9H9A7 625 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 TRIM39Q9HCM9 518 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 SNX15Q9NRS6 342 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.39□□□□□ -0.91
YBX3-215ENST00000544504 TRMT6Q9UJA5 497 aaKnown RBP9.39□□□□□ -0.91
YBX3-215ENST00000544504 INVSQ9Y283 1065 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 MTO1Q9Y2Z2 717 aaKnown RBP9.39□□□□□ -0.91
YBX3-215ENST00000544504 ACOT9Q9Y305 439 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 HS3ST3A1Q9Y663 406 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 TRPM6Q9BX84 2022 aa9.39□□□□□ -0.91
YBX3-215ENST00000544504 CFAP46Q8IYW2 2715 aa9.38□□□□□ -0.91
YBX3-215ENST00000544504 A0A096LPK6 155 aa9.38□□□□□ -0.91
YBX3-215ENST00000544504 FADS2P1A8MWK0 482 aa9.38□□□□□ -0.91
YBX3-215ENST00000544504 C10orf142B7Z368 130 aa9.38□□□□□ -0.91
YBX3-215ENST00000544504 EIF3FO00303 357 aaPredicted RBP9.38□□□□□ -0.91
YBX3-215ENST00000544504 COPEO14579 308 aa9.38□□□□□ -0.91
YBX3-215ENST00000544504 TPP1O14773 563 aa9.38□□□□□ -0.91
YBX3-215ENST00000544504 TM9SF1O15321 606 aa9.38□□□□□ -0.91
YBX3-215ENST00000544504 SLC31A1O15431 190 aa9.38□□□□□ -0.91
YBX3-215ENST00000544504 PRPF4O43172 522 aaKnown RBP eCLIP9.38□□□□□ -0.91
YBX3-215ENST00000544504 MAP3K13O43283 966 aa9.38□□□□□ -0.91
YBX3-215ENST00000544504 RFPL1O75677 317 aa9.38□□□□□ -0.91
YBX3-215ENST00000544504 FSBPO95073 299 aa9.38□□□□□ -0.91
YBX3-215ENST00000544504 ALDOAP04075 364 aaKnown RBP9.38□□□□□ -0.91
YBX3-215ENST00000544504 PCCBP05166 539 aa9.38□□□□□ -0.91
YBX3-215ENST00000544504 APOA4P06727 396 aa9.38□□□□□ -0.91
YBX3-215ENST00000544504 PYGBP11216 843 aa9.38□□□□□ -0.91
YBX3-215ENST00000544504 MYCLP1P12525 358 aaPredicted RBP9.38□□□□□ -0.91
YBX3-215ENST00000544504 BRAFP15056 766 aa9.38□□□□□ -0.91
YBX3-215ENST00000544504 KRT4P19013 534 aa9.38□□□□□ -0.91
YBX3-215ENST00000544504 CHRM3P20309 590 aa9.38□□□□□ -0.91
YBX3-215ENST00000544504 NR1D1P20393 614 aa9.38□□□□□ -0.91
YBX3-215ENST00000544504 FDXRP22570 491 aa9.38□□□□□ -0.91
YBX3-215ENST00000544504 HTR1BP28222 390 aa9.38□□□□□ -0.91
YBX3-215ENST00000544504 RGS4P49798 205 aa9.38□□□□□ -0.91
YBX3-215ENST00000544504 ATXN3P54252 364 aaPredicted RBP9.38□□□□□ -0.91
YBX3-215ENST00000544504 TAS2R39P59534 338 aa9.38□□□□□ -0.91
YBX3-215ENST00000544504 TMEM115Q12893 351 aaPredicted RBP9.38□□□□□ -0.91
YBX3-215ENST00000544504 ZKSCAN8Q15776 578 aaPredicted RBP9.38□□□□□ -0.91
YBX3-215ENST00000544504 FAM83EQ2M2I3 478 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms