RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 MAPK9P45984 424 aa17.24■□□□□ 0.35
CLSTN3-210ENST00000540931 ACTR1AP61163 376 aa17.24■□□□□ 0.35
CLSTN3-210ENST00000540931 CTBSQ01459 385 aa17.24■□□□□ 0.35
CLSTN3-210ENST00000540931 TMED2Q15363 201 aa17.24■□□□□ 0.35
CLSTN3-210ENST00000540931 ZNF542PQ5EBM4 170 aa17.24■□□□□ 0.35
CLSTN3-210ENST00000540931 IGDCC3Q8IVU1 814 aa17.24■□□□□ 0.35
CLSTN3-210ENST00000540931 SGF29Q96ES7 293 aa17.24■□□□□ 0.35
CLSTN3-210ENST00000540931 PWWP2AQ96N64 755 aa17.24■□□□□ 0.35
CLSTN3-210ENST00000540931 CYTH2Q99418 400 aa17.24■□□□□ 0.35
CLSTN3-210ENST00000540931 CCDC77Q9BR77 488 aa17.24■□□□□ 0.35
CLSTN3-210ENST00000540931 TMEM168Q9H0V1 697 aa17.24■□□□□ 0.35
CLSTN3-210ENST00000540931 LRRC4CQ9HCJ2 640 aa17.24■□□□□ 0.35
CLSTN3-210ENST00000540931 IARS2Q9NSE4 1012 aaKnown RBP17.24■□□□□ 0.35
CLSTN3-210ENST00000540931 KLF15Q9UIH9 416 aa17.24■□□□□ 0.35
CLSTN3-210ENST00000540931 PCOLCE2Q9UKZ9 415 aa17.24■□□□□ 0.35
CLSTN3-210ENST00000540931 CACNA1GO43497 2377 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 KIR2DS5A0A0G2JLQ3 304 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 A0A0G2JNG1 304 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 UBA6A0AVT1 1052 aaPredicted RBP17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 OR2AG2A6NM03 316 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 KIR2DS3K7RE56 304 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 BANF1O75531 89 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 S1PR4O95977 384 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 ERVK-10P10266 1014 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 CD9P21926 228 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 ECHS1P30084 290 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 CDKN1CP49918 316 aaPredicted RBP17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 B4GALNT1Q00973 533 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 KIR2DS5Q14953 304 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 FASTKD3Q14CZ7 662 aaKnown RBP17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 SHBQ15464 509 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 UAP1L1Q3KQV9 507 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 HP1BP3Q5SSJ5 553 aaPredicted RBP17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 C6orf132Q5T0Z8 1188 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 TEDDM1Q5T9Z0 273 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 AGAP9Q5VTM2 703 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 LRRC8EQ6NSJ5 796 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 EMBQ6PCB8 327 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 CCNI2Q6ZMN8 369 aaPredicted RBP17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 RBM12BQ8IXT5 1001 aaKnown RBP17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 ASZ1Q8WWH4 475 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 LPGAT1Q92604 370 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 C9orf72Q96LT7 481 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 CPNE1Q99829 537 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 FUT8Q9BYC5 575 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 DPEP2Q9H4A9 486 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 ANKZF1Q9H8Y5 726 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 PPCSQ9HAB8 311 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 KLC4Q9NSK0 619 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 SPATS2LQ9NUQ6 558 aaKnown RBP17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 CFAP47Q6ZTR5 3102 aa17.23■□□□□ 0.35
CLSTN3-210ENST00000540931 KNL1Q8NG31 2342 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 TP53BP1Q12888 1972 aaPredicted RBP17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 A0A087WUV0 522 aaPredicted RBP17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 TCRBV9S1A1TA0A576 114 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 E5RI56 91 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 YY2O15391 372 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 GDF9O60383 454 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 FUCA1P04066 466 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 APOA4P06727 396 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 ABHD2P08910 425 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 ACP5P13686 325 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 PKMP14618 531 aaKnown RBP17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 CSRP1P21291 193 aaKnown RBP17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 SLC1A2P43004 574 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 CD151P48509 253 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 CSE1LP55060 971 aaKnown RBP17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 BNIP3Q12983 259 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 KLHL38Q2WGJ6 581 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 TTLL9Q3SXZ7 439 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 KHDC1Q4VXA5 237 aaKnown RBP17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 PRAMEF14Q5SWL7 426 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 METRNLQ641Q3 311 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 CRTC3Q6UUV7 619 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 KANSL1Q7Z3B3 1105 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 ZNF547Q8IVP9 402 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 SLC25A45Q8N413 288 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 FAM46DQ8NEK8 389 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 RHBDD1Q8TEB9 315 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 SETD7Q8WTS6 366 aaKnown RBP17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 KCNJ9Q92806 393 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 TMEM159Q96B96 161 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 SH3KBP1Q96B97 665 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 P2RY12Q9H244 342 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 IL21RQ9HBE5 538 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 ARFGAP3Q9NP61 516 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 FSCN3Q9NQT6 498 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 LATS2Q9NRM7 1088 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 TAAR2Q9P1P5 351 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 MARCH4Q9P2E8 410 aaPredicted RBP17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 HEBP2Q9Y5Z4 205 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 IKBKGQ9Y6K9 419 aa17.22■□□□□ 0.35
CLSTN3-210ENST00000540931 FAM159BA6NKW6 160 aa17.21■□□□□ 0.35
CLSTN3-210ENST00000540931 EIF3FO00303 357 aaPredicted RBP17.21■□□□□ 0.35
CLSTN3-210ENST00000540931 GPR39O43194 453 aa17.21■□□□□ 0.35
CLSTN3-210ENST00000540931 KDM1AO60341 852 aa17.21■□□□□ 0.35
CLSTN3-210ENST00000540931 F3P13726 295 aa17.21■□□□□ 0.35
CLSTN3-210ENST00000540931 NDUFS1P28331 727 aa17.21■□□□□ 0.35
CLSTN3-210ENST00000540931 SSTR1P30872 391 aa17.21■□□□□ 0.35
CLSTN3-210ENST00000540931 CTSCP53634 463 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms