RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 UBXN10Q96LJ8 280 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 DMRTB1Q96MA1 342 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 RDH12Q96NR8 316 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 MBOAT4Q96T53 435 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 SLC9A7Q96T83 725 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 RASSF1Q9NS23 344 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 GIMAP4Q9NUV9 329 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 TSR3Q9UJK0 312 aaKnown RBP12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 I6L893 689 aaPredicted RBP12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 PGLSO95336 258 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 HLA-DQB2P05538 268 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 CASP3P42574 277 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 TAF6P49848 677 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 SERPINH1P50454 418 aaKnown RBP12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 EMX2Q04743 252 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 RAPSNQ13702 412 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 CLCA4Q14CN2 919 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 CRY1Q16526 586 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 DENND5AQ6IQ26 1287 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 TMEM207Q6UWW9 146 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 CCBE1Q6UXH8 406 aaPredicted RBP12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 BEND5Q7L4P6 421 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 CDYL2Q8N8U2 506 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 SETD9Q8NE22 299 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 OR10Q1Q8NGQ4 319 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 NTAN1Q96AB6 310 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 AIG1Q9NVV5 245 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 IL37Q9NZH6 218 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 FAM50BQ9Y247 325 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 ANK1P16157 1881 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 LINC00854A0A1B0GVQ3 168 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 SAGE2PA6NJ88 616 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 PRMT5O14744 637 aaPredicted RBP12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 PRKD3O94806 890 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 EGFRP00533 1210 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 MT-ND2P03891 347 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 EIF2DP41214 584 aaKnown RBP12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 ZNF404Q494X3 552 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 KANK2Q63ZY3 851 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 NEK10Q6ZWH5 1172 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 PHF10Q8WUB8 498 aaKnown RBP12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 WDR6Q9NNW5 1121 aaKnown RBP12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 TREX1Q9NSU2 369 aa12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 TRMT13Q9NUP7 481 aaKnown RBP12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 UBQLN1Q9UMX0 589 aaKnown RBP12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 FNDC3AQ9Y2H6 1198 aaKnown RBP12.7□□□□□ -0.38
SFSWAP-209ENST00000540469 ISPDA4D126 451 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 ASPDHA6ND91 283 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 A8MV72 311 aaPredicted RBP12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 TTC34A8MYJ7 566 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 C19orf81C9J6K1 198 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 UPK1AO00322 258 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 RGS10O43665 173 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 RECQL4O94761 1208 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 NTRK1P04629 796 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 NRG1Q02297 640 aaPredicted RBP12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 CDK5R2Q13319 367 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 ACOX1Q15067 660 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 GJC2Q5T442 439 aaPredicted RBP12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 CILP2Q8IUL8 1156 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 RIMKLAQ8IXN7 391 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 FAM83FQ8NEG4 500 aaPredicted RBP12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 AGBL3Q8NEM8 1001 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 DYNC2LI1Q8TCX1 351 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 EMID1Q96A84 441 aaPredicted RBP12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 CEP19Q96LK0 163 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 TEPSINQ96N21 525 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 SMOC2Q9H3U7 446 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 MRM3Q9HC36 420 aaKnown RBP12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 NT5MQ9NPB1 228 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 CDH9Q9ULB4 789 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 RABL2BQ9UNT1 228 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 CARD8Q9Y2G2 431 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 GMPPBQ9Y5P6 360 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 RHOBTB1O94844 696 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 CYP11A1P05108 521 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 FGF4P08620 206 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 MYCLP1P12525 358 aaPredicted RBP12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 IGFBP5P24593 272 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 ARHGDIAP52565 204 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 AIF1P55008 147 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 NR6A1Q15406 480 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 OR4D1Q15615 310 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 ZFP69Q49AA0 526 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 AHSA2Q719I0 299 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 SPATC1Q76KD6 591 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 DET1Q7L5Y6 550 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 ELMOD1Q8N336 334 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 SVOPLQ8N434 492 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 BTN2A3PQ96KV6 586 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 CDK5RAP1Q96SZ6 601 aaKnown RBP12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 TRIM39Q9HCM9 518 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 KIF17Q9P2E2 1029 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 MARCH4Q9P2E8 410 aaPredicted RBP12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 PGAP2Q9UHJ9 254 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 PMF1-BGLAPU3KQ54 211 aa12.69□□□□□ -0.38
SFSWAP-209ENST00000540469 A0A1B0GTL3 188 aa12.68□□□□□ -0.38
SFSWAP-209ENST00000540469 FAM234BA2RU67 622 aa12.68□□□□□ -0.38
SFSWAP-209ENST00000540469 MGEA5O60502 916 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms