RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 ZDHHC7Q9NXF8 308 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 GON4LQ3T8J9 2241 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 EPOP01588 193 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 OGNP20774 298 aaKnown RBP16.69■□□□□ 0.26
USP28-208ENST00000540438 HOXD10P28358 340 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 GSK3BP49841 420 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 BTG3Q14201 252 aaPredicted RBP16.69■□□□□ 0.26
USP28-208ENST00000540438 MYLK3Q32MK0 819 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 RNF145Q96MT1 663 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 CLPBQ9H078 707 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 SPATS2LQ9NUQ6 558 aaKnown RBP16.69■□□□□ 0.26
USP28-208ENST00000540438 IL17CQ9P0M4 197 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 VPS4AQ9UN37 437 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 ALDH1A1P00352 501 aa16.68■□□□□ 0.26
USP28-208ENST00000540438 XIAPP98170 497 aa16.68■□□□□ 0.26
USP28-208ENST00000540438 TMEM214Q6NUQ4 689 aaKnown RBP16.68■□□□□ 0.26
USP28-208ENST00000540438 NCEH1Q6PIU2 408 aa16.68■□□□□ 0.26
USP28-208ENST00000540438 GAREM2Q75VX8 874 aa16.68■□□□□ 0.26
USP28-208ENST00000540438 SPRED2Q7Z698 418 aa16.68■□□□□ 0.26
USP28-208ENST00000540438 CMTR2Q8IYT2 770 aaKnown RBP16.68■□□□□ 0.26
USP28-208ENST00000540438 GPR150Q8NGU9 434 aa16.68■□□□□ 0.26
USP28-208ENST00000540438 MAGEE2Q8TD90 523 aaPredicted RBP16.68■□□□□ 0.26
USP28-208ENST00000540438 MYO19Q96H55 970 aa16.68■□□□□ 0.26
USP28-208ENST00000540438 ZFRQ96KR1 1074 aaKnown RBP16.68■□□□□ 0.26
USP28-208ENST00000540438 CENPKQ9BS16 269 aa16.68■□□□□ 0.26
USP28-208ENST00000540438 ZFYVE1Q9HBF4 777 aa16.68■□□□□ 0.26
USP28-208ENST00000540438 CRLS1Q9UJA2 301 aa16.68■□□□□ 0.26
USP28-208ENST00000540438 ANGPTL3Q9Y5C1 460 aa16.68■□□□□ 0.26
USP28-208ENST00000540438 GPR45Q9Y5Y3 372 aa16.68■□□□□ 0.26
USP28-208ENST00000540438 DHRS12A0PJE2 317 aa16.68■□□□□ 0.26
USP28-208ENST00000540438 TMX2-CTNND1H3BSU7 103 aa16.68■□□□□ 0.26
USP28-208ENST00000540438 TEX28O15482 410 aa16.68■□□□□ 0.26
USP28-208ENST00000540438 SLC22A3O75751 556 aa16.68■□□□□ 0.26
USP28-208ENST00000540438 RPLP2P05387 115 aaKnown RBP16.68■□□□□ 0.26
USP28-208ENST00000540438 ITGB8P26012 769 aa16.68■□□□□ 0.26
USP28-208ENST00000540438 GOLGA7Q7Z5G4 137 aa16.68■□□□□ 0.26
USP28-208ENST00000540438 PHACTR4Q8IZ21 702 aa16.68■□□□□ 0.26
USP28-208ENST00000540438 HS3ST5Q8IZT8 346 aa16.68■□□□□ 0.26
USP28-208ENST00000540438 CORO1BQ9BR76 489 aa16.68■□□□□ 0.26
USP28-208ENST00000540438 ABCB8Q9NUT2 735 aa16.68■□□□□ 0.26
USP28-208ENST00000540438 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.68■□□□□ 0.26
USP28-208ENST00000540438 OAS3Q9Y6K5 1087 aaKnown RBP16.68■□□□□ 0.26
USP28-208ENST00000540438 NPIPB15A6NHN6 443 aaPredicted RBP16.67■□□□□ 0.26
USP28-208ENST00000540438 STAMBPO95630 424 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 NFKBIAP25963 317 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 PCSK6P29122 969 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 TTPAP49638 278 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 CLCN7P51798 805 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 TSTA3Q13630 321 aaPredicted RBP16.67■□□□□ 0.26
USP28-208ENST00000540438 AP5B1Q2VPB7 878 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 GALNT10Q86SR1 603 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 ZNF786Q8N393 782 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 FAM86B1Q8N7N1 296 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 OR2T34Q8NGX1 318 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 OR2T3Q8NH03 318 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 MPP4Q96JB8 637 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 TRMOQ9BU70 441 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 ZDHHC6Q9H6R6 413 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 SUCOQ9UBS9 1254 aaKnown RBP16.67■□□□□ 0.26
USP28-208ENST00000540438 B4GAT1O43505 415 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 CAPN15O75808 1086 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 ESRRBO95718 433 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 FAM58BPP0C7Q3 252 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 POLR2JP52435 117 aaKnown RBP16.67■□□□□ 0.26
USP28-208ENST00000540438 BOP1Q14137 746 aaKnown RBP16.67■□□□□ 0.26
USP28-208ENST00000540438 CBX2Q14781 532 aaPredicted RBP16.67■□□□□ 0.26
USP28-208ENST00000540438 VEPH1Q14D04 833 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 ZFP1Q6P2D0 407 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 BLOC1S3Q6QNY0 202 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 ZFP28Q8NHY6 868 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 PROKR1Q8TCW9 393 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 ZNF599Q96NL3 588 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 KCTD14Q9BQ13 255 aaPredicted RBP16.67■□□□□ 0.26
USP28-208ENST00000540438 ALG2Q9H553 416 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 PRMT5O14744 637 aaPredicted RBP16.67■□□□□ 0.26
USP28-208ENST00000540438 CCL16O15467 120 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 UGT2B4P06133 528 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 RPS17P08708 135 aaKnown RBP16.67■□□□□ 0.26
USP28-208ENST00000540438 BPIP17213 487 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 NKX3-2P78367 333 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 LMAN2Q12907 356 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 ELAVL2Q12926 359 aaKnown RBP16.67■□□□□ 0.26
USP28-208ENST00000540438 ATP6AP1LQ52LC2 224 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 NANOGP8Q6NSW7 305 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 TICAM1Q8IUC6 712 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 EPHX4Q8IUS5 362 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 GPR26Q8NDV2 337 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 SCAMP4Q969E2 229 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 ASIC4Q96FT7 647 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 TTLL2Q9BWV7 592 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 NANOGQ9H9S0 305 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 SDR39U1Q9NRG7 319 aaPredicted RBP16.67■□□□□ 0.26
USP28-208ENST00000540438 INTS10Q9NVR2 710 aaKnown RBP16.67■□□□□ 0.26
USP28-208ENST00000540438 INTS6Q9UL03 887 aaKnown RBP16.67■□□□□ 0.26
USP28-208ENST00000540438 HCFC2Q9Y5Z7 792 aa16.67■□□□□ 0.26
USP28-208ENST00000540438 EI24O14681 340 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 FFAR2O15552 330 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 CHEK2O96017 543 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 HMOX2P30519 316 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 BCL2L1Q07817 233 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms