RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 ESRP2Q9H6T0 727 aaKnown RBP3.47□□□□□ -1.85
USP48-215ENST00000534705 EBF2Q9HAK2 575 aa3.47□□□□□ -1.85
USP48-215ENST00000534705 DDX4Q9NQI0 724 aaKnown RBP3.47□□□□□ -1.85
USP48-215ENST00000534705 ZNF224Q9NZL3 707 aa3.47□□□□□ -1.85
USP48-215ENST00000534705 SARDHQ9UL12 918 aa3.47□□□□□ -1.85
USP48-215ENST00000534705 A4GNTQ9UNA3 340 aa3.47□□□□□ -1.85
USP48-215ENST00000534705 FAM96BQ9Y3D0 163 aa3.47□□□□□ -1.85
USP48-215ENST00000534705 STON1Q9Y6Q2 735 aa3.47□□□□□ -1.85
USP48-215ENST00000534705 SCN5AQ14524 2016 aa3.47□□□□□ -1.85
USP48-215ENST00000534705 MED23Q9ULK4 1368 aa3.47□□□□□ -1.85
USP48-215ENST00000534705 SNAP23O00161 211 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 PSMD14O00487 310 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 TNFSF14O43557 240 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 ECE2O60344 883 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 TMCC2O75069 709 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 TIPRLO75663 272 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 CGAP01215 116 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 SRCP12931 536 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 CAPN3P20807 821 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 STX2P32856 288 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 GGT5P36269 586 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 PIGAP37287 484 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 COMPP49747 757 aaPredicted RBP3.46□□□□□ -1.86
USP48-215ENST00000534705 MPP1Q00013 466 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 GRIK3Q13003 919 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 TDGQ13569 410 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 TNFAIP1Q13829 316 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 BECN1Q14457 450 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 ZRSR1Q15695 479 aaKnown RBP3.46□□□□□ -1.86
USP48-215ENST00000534705 CDC37Q16543 378 aaPredicted RBP3.46□□□□□ -1.86
USP48-215ENST00000534705 KRT71Q3SY84 523 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 LRRC8EQ6NSJ5 796 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 RHBDF2Q6PJF5 856 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 DSTYKQ6XUX3 929 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 C15orf52Q6ZUT6 534 aaKnown RBP3.46□□□□□ -1.86
USP48-215ENST00000534705 NOXA1Q86UR1 476 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 EGFL6Q8IUX8 553 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 DHX40Q8IX18 779 aaKnown RBP3.46□□□□□ -1.86
USP48-215ENST00000534705 SLC35F3Q8IY50 421 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 NAGSQ8N159 534 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 ESX1Q8N693 406 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 ST8SIA4Q92187 359 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 ARHGAP45Q92619 1136 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 SCMH1Q96GD3 660 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 HES6Q96HZ4 224 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 PUS3Q9BZE2 481 aaKnown RBP3.46□□□□□ -1.86
USP48-215ENST00000534705 BICC1Q9H694 974 aaKnown RBP3.46□□□□□ -1.86
USP48-215ENST00000534705 DBNDD1Q9H9R9 158 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 VEZTQ9HBM0 779 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 MAGEE1Q9HCI5 957 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 BPIFA1Q9NP55 256 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 MKKSQ9NPJ1 570 aaPredicted RBP3.46□□□□□ -1.86
USP48-215ENST00000534705 MCM9Q9NXL9 1143 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 CHMP5Q9NZZ3 219 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 SLC9A2Q9UBY0 812 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 SIX4Q9UIU6 781 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 CRYL1Q9Y2S2 319 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 CYP46A1Q9Y6A2 500 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 COL11A1P12107 1806 aaPredicted RBP3.46□□□□□ -1.86
USP48-215ENST00000534705 COL1A1P02452 1464 aaPredicted RBP3.46□□□□□ -1.86
USP48-215ENST00000534705 MYH6P13533 1939 aa3.46□□□□□ -1.86
USP48-215ENST00000534705 RBBP6Q7Z6E9 1792 aaKnown RBP3.46□□□□□ -1.86
USP48-215ENST00000534705 RLFQ13129 1914 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 GREB1LQ9C091 1923 aaPredicted RBP3.45□□□□□ -1.86
USP48-215ENST00000534705 SMCHD1A6NHR9 2005 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 A6NCN8 305 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 USP17L23D6RBM5 183 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 BCAT2O15382 392 aaPredicted RBP3.45□□□□□ -1.86
USP48-215ENST00000534705 PLRG1O43660 514 aaKnown RBP3.45□□□□□ -1.86
USP48-215ENST00000534705 LDB3O75112 727 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 NDUFS7O75251 213 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 UFL1O94874 794 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 PMS2P2O95744 297 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 PTMAP06454 111 aaKnown RBP3.45□□□□□ -1.86
USP48-215ENST00000534705 PYGLP06737 847 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 LINC00271P0C7V0 271 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 SSTR2P30874 369 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 CDAP32320 146 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 SHMT1P34896 483 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 EPHX2P34913 555 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 CPOXP36551 454 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 PAFAH1B1P43034 410 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 GMPSP49915 693 aaPredicted RBP3.45□□□□□ -1.86
USP48-215ENST00000534705 EIF3BP55884 814 aaKnown RBP3.45□□□□□ -1.86
USP48-215ENST00000534705 SEC61BP60468 96 aaKnown RBP3.45□□□□□ -1.86
USP48-215ENST00000534705 EEF1A2Q05639 463 aaKnown RBP3.45□□□□□ -1.86
USP48-215ENST00000534705 SF3B4Q15427 424 aaKnown RBP eCLIP3.45□□□□□ -1.862e-6■■■■□ 23.6
USP48-215ENST00000534705 MMEL1Q495T6 779 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 ZNF672Q499Z4 452 aaPredicted RBP3.45□□□□□ -1.86
USP48-215ENST00000534705 SPECC1Q5M775 1068 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 ITPRIPL1Q6GPH6 555 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 ANKRD54Q6NXT1 300 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 CCNI2Q6ZMN8 369 aaPredicted RBP3.45□□□□□ -1.86
USP48-215ENST00000534705 FASTKD5Q7L8L6 764 aaKnown RBP3.45□□□□□ -1.86
USP48-215ENST00000534705 ATG9AQ7Z3C6 839 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 SLC46A3Q7Z3Q1 461 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 ZCCHC9Q8N567 271 aaKnown RBP3.45□□□□□ -1.86
USP48-215ENST00000534705 KIF1BPQ96EK5 621 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 SAAL1Q96ER3 474 aa3.45□□□□□ -1.86
USP48-215ENST00000534705 KLHL15Q96M94 604 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms