RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 PNNQ9H307 717 aaKnown RBP3.27□□□□□ -1.89
CD44-229ENST00000528672 NOL11Q9H8H0 719 aaKnown RBP3.27□□□□□ -1.89
CD44-229ENST00000528672 TAS2R14Q9NYV8 317 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 CTNNA3Q9UI47 895 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 LAMP5Q9UJQ1 280 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 DBNLQ9UJU6 430 aaKnown RBP3.27□□□□□ -1.89
CD44-229ENST00000528672 RCOR1Q9UKL0 485 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 PCDHGA5Q9Y5G8 931 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 STON1Q9Y6Q2 735 aa3.27□□□□□ -1.89
CD44-229ENST00000528672 COL3A1P02461 1466 aaPredicted RBP3.27□□□□□ -1.89
CD44-229ENST00000528672 RAD50Q92878 1312 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 TRBV5-3A0A0A0MS03 114 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 A4D1N5 150 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 ZNF814B7Z6K7 855 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 STMND1H3BQB6 276 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 MAP2K7O14733 419 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 CELF2O95319 508 aaKnown RBP3.26□□□□□ -1.89
CD44-229ENST00000528672 CLDN7O95471 211 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 FGFR1OPO95684 399 aaKnown RBP3.26□□□□□ -1.89
CD44-229ENST00000528672 CYP1A2P05177 515 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 FGF2P09038 288 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 LINGO3P0C6S8 592 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 SRCP12931 536 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 HLA-DPA1P20036 260 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 TNFRSF1BP20333 461 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 CASTP20810 708 aaKnown RBP3.26□□□□□ -1.89
CD44-229ENST00000528672 MYF6P23409 242 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 GPTP24298 496 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 DCTDP32321 178 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 HSPA1LP34931 641 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 AVPR1AP37288 418 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 MTHFRP42898 656 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 ABCG1P45844 678 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 METAP2P50579 478 aaKnown RBP eCLIP3.26□□□□□ -1.89
CD44-229ENST00000528672 GTF2A1P52655 376 aaPredicted RBP3.26□□□□□ -1.89
CD44-229ENST00000528672 CDH12P55289 794 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 RBPJQ06330 500 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 TRAF1Q13077 416 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 MORF4L2Q15014 288 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 FAM98BQ52LJ0 330 aaKnown RBP3.26□□□□□ -1.89
CD44-229ENST00000528672 ZRANB3Q5FWF4 1079 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 SFMBT2Q5VUG0 894 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 MORN5Q5VZ52 161 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 TATDN1Q6P1N9 297 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 ALKBH5Q6P6C2 394 aaKnown RBP3.26□□□□□ -1.89
CD44-229ENST00000528672 OTOAQ7RTW8 1153 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 SPATA21Q7Z572 469 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 SPATA19Q7Z5L4 167 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 CTU1Q7Z7A3 348 aaKnown RBP3.26□□□□□ -1.89
CD44-229ENST00000528672 CCDC190Q86UF4 302 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 CEP57Q86XR8 500 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 CCDC65Q8IXS2 484 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 MB21D2Q8IYB1 491 aaPredicted RBP3.26□□□□□ -1.89
CD44-229ENST00000528672 GALNT16Q8N428 558 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 FBXO39Q8N4B4 442 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 SPATA6LQ8N4H0 392 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 KDM1BQ8NB78 822 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 SLC4A11Q8NBS3 891 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 FIBINQ8TAL6 211 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 SUN5Q8TC36 379 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 KIAA1524Q8TCG1 905 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 HM13Q8TCT9 377 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 EXOC4Q96A65 974 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 TMEM18Q96B42 140 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 ERO1AQ96HE7 468 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 ZFYVE19Q96K21 471 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 SIGLEC11Q96RL6 698 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 DDOQ99489 341 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 PPIL3Q9H2H8 161 aaKnown RBP3.26□□□□□ -1.89
CD44-229ENST00000528672 MAGIXQ9H6Y5 334 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 ANKZF1Q9H8Y5 726 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 MKKSQ9NPJ1 570 aaPredicted RBP3.26□□□□□ -1.89
CD44-229ENST00000528672 ACSS1Q9NUB1 689 aaPredicted RBP3.26□□□□□ -1.89
CD44-229ENST00000528672 TMEM45AQ9NWC5 275 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 CHMP5Q9NZZ3 219 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 HEY2Q9UBP5 337 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 SLC24A2Q9UI40 661 aa3.26□□□□□ -1.89
CD44-229ENST00000528672 AGO2Q9UKV8 859 aaKnown RBP3.26□□□□□ -1.89
CD44-229ENST00000528672 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.26□□□□□ -1.89
CD44-229ENST00000528672 A0A0B4J293 547 aa3.25□□□□□ -1.89
CD44-229ENST00000528672 HTR3EA5X5Y0 456 aa3.25□□□□□ -1.89
CD44-229ENST00000528672 ENO4A6NNW6 628 aa3.25□□□□□ -1.89
CD44-229ENST00000528672 CCDC188H7C350 402 aa3.25□□□□□ -1.89
CD44-229ENST00000528672 I6L893 689 aaPredicted RBP3.25□□□□□ -1.89
CD44-229ENST00000528672 M0QZ24 198 aa3.25□□□□□ -1.89
CD44-229ENST00000528672 KIF2AO00139 706 aaPredicted RBP3.25□□□□□ -1.89
CD44-229ENST00000528672 DDX39AO00148 427 aaKnown RBP3.25□□□□□ -1.89
CD44-229ENST00000528672 CASQ2O14958 399 aaPredicted RBP3.25□□□□□ -1.89
CD44-229ENST00000528672 ZNF263O14978 683 aa3.25□□□□□ -1.89
CD44-229ENST00000528672 PRAMEF11O60813 436 aa3.25□□□□□ -1.89
CD44-229ENST00000528672 ATG13O75143 517 aa3.25□□□□□ -1.89
CD44-229ENST00000528672 SIX3O95343 332 aaPredicted RBP3.25□□□□□ -1.89
CD44-229ENST00000528672 GBAP04062 536 aa3.25□□□□□ -1.89
CD44-229ENST00000528672 CYC1P08574 325 aa3.25□□□□□ -1.89
CD44-229ENST00000528672 OR52Z1P0C646 297 aa3.25□□□□□ -1.89
CD44-229ENST00000528672 SUPT20HL2P0C7V6 817 aa3.25□□□□□ -1.89
CD44-229ENST00000528672 CTSAP10619 480 aa3.25□□□□□ -1.89
CD44-229ENST00000528672 P4HA1P13674 534 aa3.25□□□□□ -1.89
CD44-229ENST00000528672 DDX5P17844 614 aaKnown RBP3.25□□□□□ -1.89
CD44-229ENST00000528672 PPP3CCP48454 512 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms