RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 THAP1Q9NVV9 213 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 RNF112Q9ULX5 631 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 ATG2BQ96BY7 2078 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 NPEPPSL1A6NEC2 478 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 CDC7O00311 574 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 SGTAO43765 313 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 KERAO60938 352 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 SMIM24O75264 130 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 TPBGLP0DKB5 382 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 AOAHP28039 575 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 TEAD1P28347 426 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 FZD5Q13467 585 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 GTF2H3Q13889 308 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 ACSBG2Q5FVE4 666 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 CES4AQ5XG92 561 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 ADGRG6Q86SQ4 1221 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 TRIM74Q86UV6 250 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 SLC22A9Q8IVM8 553 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 OR6Y1Q8NGX8 325 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 KLK6Q92876 244 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 C7orf26Q96N11 449 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 BTBD1Q9H0C5 482 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 IKZF3Q9UKT9 509 aa20.71■□□□□ 0.91
VPS28-208ENST00000527797 PLXNB3Q9ULL4 1909 aa20.7■□□□□ 0.9
VPS28-208ENST00000527797 SYCE1LA8MT33 242 aa20.7■□□□□ 0.9
VPS28-208ENST00000527797 SNNO75324 88 aaPredicted RBP20.7■□□□□ 0.9
VPS28-208ENST00000527797 SLC1A6P48664 564 aa20.7■□□□□ 0.9
VPS28-208ENST00000527797 PRLHRP49683 370 aa20.7■□□□□ 0.9
VPS28-208ENST00000527797 CTSCP53634 463 aa20.7■□□□□ 0.9
VPS28-208ENST00000527797 DNAJB13P59910 316 aa20.7■□□□□ 0.9
VPS28-208ENST00000527797 IRF4Q15306 451 aa20.7■□□□□ 0.9
VPS28-208ENST00000527797 TSNQ15631 228 aaKnown RBP20.7■□□□□ 0.9
VPS28-208ENST00000527797 TMEM220Q6QAJ8 160 aa20.7■□□□□ 0.9
VPS28-208ENST00000527797 NAPRTQ6XQN6 538 aa20.7■□□□□ 0.9
VPS28-208ENST00000527797 TRIM67Q6ZTA4 783 aa20.7■□□□□ 0.9
VPS28-208ENST00000527797 PIGWQ7Z7B1 504 aa20.7■□□□□ 0.9
VPS28-208ENST00000527797 TP53I13Q8NBR0 393 aaPredicted RBP20.7■□□□□ 0.9
VPS28-208ENST00000527797 ASB12Q8WXK4 309 aa20.7■□□□□ 0.9
VPS28-208ENST00000527797 ATOH8Q96SQ7 321 aa20.7■□□□□ 0.9
VPS28-208ENST00000527797 GATA5Q9BWX5 397 aaPredicted RBP20.7■□□□□ 0.9
VPS28-208ENST00000527797 FOXQ1Q9C009 403 aa20.7■□□□□ 0.9
VPS28-208ENST00000527797 OR2AG1Q9H205 316 aa20.7■□□□□ 0.9
VPS28-208ENST00000527797 MBNL1Q9NR56 388 aaKnown RBP20.7■□□□□ 0.9
VPS28-208ENST00000527797 NEMP2A6NFY4 417 aa20.69■□□□□ 0.9
VPS28-208ENST00000527797 A8MT66 165 aa20.69■□□□□ 0.9
VPS28-208ENST00000527797 TMEM114B3SHH9 223 aa20.69■□□□□ 0.9
VPS28-208ENST00000527797 EIF3FO00303 357 aaPredicted RBP20.69■□□□□ 0.9
VPS28-208ENST00000527797 VEGFDO43915 354 aa20.69■□□□□ 0.9
VPS28-208ENST00000527797 IPO13O94829 963 aaKnown RBP20.69■□□□□ 0.9
VPS28-208ENST00000527797 ENO3P13929 434 aaPredicted RBP20.69■□□□□ 0.9
VPS28-208ENST00000527797 ABCE1P61221 599 aaKnown RBP20.69■□□□□ 0.9
VPS28-208ENST00000527797 CDK3Q00526 305 aa20.69■□□□□ 0.9
VPS28-208ENST00000527797 OCRLQ01968 901 aa20.69■□□□□ 0.9
VPS28-208ENST00000527797 PLEKHS1Q5SXH7 462 aa20.69■□□□□ 0.9
VPS28-208ENST00000527797 PIWIL4Q7Z3Z4 852 aaKnown RBP20.69■□□□□ 0.9
VPS28-208ENST00000527797 HEATR4Q86WZ0 1026 aa20.69■□□□□ 0.9
VPS28-208ENST00000527797 ELMO1Q92556 727 aa20.69■□□□□ 0.9
VPS28-208ENST00000527797 EXT2Q93063 718 aa20.69■□□□□ 0.9
VPS28-208ENST00000527797 FUBP1Q96AE4 644 aaKnown RBP20.69■□□□□ 0.9
VPS28-208ENST00000527797 COX14Q96I36 57 aa20.69■□□□□ 0.9
VPS28-208ENST00000527797 CCM2Q9BSQ5 444 aa20.69■□□□□ 0.9
VPS28-208ENST00000527797 SGK2Q9HBY8 427 aa20.69■□□□□ 0.9
VPS28-208ENST00000527797 USP36Q9P275 1121 aaKnown RBP20.69■□□□□ 0.9
VPS28-208ENST00000527797 ATXN10Q9UBB4 475 aa20.69■□□□□ 0.9
VPS28-208ENST00000527797 SPTBN5Q9NRC6 3674 aaKnown RBP20.69■□□□□ 0.9
VPS28-208ENST00000527797 LRRC72A6NJI9 287 aa20.68■□□□□ 0.9
VPS28-208ENST00000527797 MAT2AP31153 395 aaKnown RBP20.68■□□□□ 0.9
VPS28-208ENST00000527797 ACSL1P33121 698 aa20.68■□□□□ 0.9
VPS28-208ENST00000527797 NAGLUP54802 743 aa20.68■□□□□ 0.9
VPS28-208ENST00000527797 HSPA14Q0VDF9 509 aa20.68■□□□□ 0.9
VPS28-208ENST00000527797 BOP1Q14137 746 aaKnown RBP20.68■□□□□ 0.9
VPS28-208ENST00000527797 GAS6Q14393 721 aa20.68■□□□□ 0.9
VPS28-208ENST00000527797 INPP5AQ14642 412 aa20.68■□□□□ 0.9
VPS28-208ENST00000527797 BCL7AQ4VC05 210 aa20.68■□□□□ 0.9
VPS28-208ENST00000527797 BEND7Q8N7W2 519 aaPredicted RBP20.68■□□□□ 0.9
VPS28-208ENST00000527797 TSTD1Q8NFU3 115 aa20.68■□□□□ 0.9
VPS28-208ENST00000527797 OR2T34Q8NGX1 318 aa20.68■□□□□ 0.9
VPS28-208ENST00000527797 ZNF514Q96K75 400 aaPredicted RBP20.68■□□□□ 0.9
VPS28-208ENST00000527797 ZNF395Q9H8N7 513 aaPredicted RBP20.68■□□□□ 0.9
VPS28-208ENST00000527797 CD93Q9NPY3 652 aa20.68■□□□□ 0.9
VPS28-208ENST00000527797 EBF1Q9UH73 591 aa20.68■□□□□ 0.9
VPS28-208ENST00000527797 TSR3Q9UJK0 312 aaKnown RBP20.68■□□□□ 0.9
VPS28-208ENST00000527797 SUPT3HB4E1H0 165 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 ITM2AO43736 263 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 SNX3O60493 162 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 SUPT3HO75486 399 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 TROVE2P10155 538 aaKnown RBP eCLIP20.67■□□□□ 0.9
VPS28-208ENST00000527797 TRIM23P36406 574 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 PPP2CBP62714 309 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 PPP2CAP67775 309 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 NFKB2Q00653 900 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 GBX1Q14549 363 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 CGB2Q6NT52 195 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 CYHR1Q6ZMK1 362 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 SPATA21Q7Z572 469 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 RAB44Q7Z6P3 723 aaPredicted RBP20.67■□□□□ 0.9
VPS28-208ENST00000527797 ADAMTSL2Q86TH1 951 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 TRIM69Q86WT6 500 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 GPSM1Q86YR5 675 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 CRLF3Q8IUI8 442 aa20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms