RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 ARHGAP11AQ6P4F7 1023 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM81Q6P7N7 255 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GJB7Q6PEY0 223 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TSSK4Q6SA08 328 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 AFTPHQ6ULP2 937 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PCSK4Q6UW60 755 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM198BQ6UWH4 519 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 C17orf99Q6UX52 265 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM108Q6UXF1 575 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 IL20RBQ6UXL0 311 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CLEC9AQ6UXN8 241 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZYG11AQ6WRX3 759 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC36A4Q6YBV0 504 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SYNE3Q6ZMZ3 975 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 MEX3BQ6ZN04 569 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 DEF8Q6ZN54 512 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 C18orf65Q6ZTR6 163 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TOM1L2Q6ZVM7 507 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 KCTD9Q7L273 389 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 DET1Q7L5Y6 550 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 HIST3H2AQ7L7L0 130 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TAOK1Q7L7X3 1001 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRSS45Q7RTY3 260 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 LRRC70Q7Z2Q7 622 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAVSQ7Z434 540 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 BNIPLQ7Z465 357 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 HAUS6Q7Z4H7 955 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 NANOGNBQ7Z5D8 188 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 KCTD20Q7Z5Y7 419 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ABI3BPQ7Z7G0 1075 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 AMIGO2Q86SJ2 522 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PHLDB2Q86SQ0 1253 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PEG10Q86TG7 708 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SYVN1Q86TM6 617 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TLK2Q86UE8 772 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TSPAN33Q86UF1 283 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CTAGE6Q86UF2 777 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SPATA24Q86W54 205 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM72BQ86X60 149 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF280BQ86YH2 543 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SIAH3Q8IW03 269 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 DENND6AQ8IWF6 608 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CTAGE4Q8IX94 777 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 DDIASQ8IXT1 998 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC15A3Q8IY34 581 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CFAP206Q8IYR0 622 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ELMOD2Q8IZ81 293 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 BCL6BQ8N143 479 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 BATF2Q8N1L9 274 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CFAP52Q8N1V2 620 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 BBS5Q8N3I7 341 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZCCHC7Q8N3Z6 543 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 RASGEF1CQ8N431 466 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CPXM2Q8N436 756 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SFRP1Q8N474 314 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ARL14Q8N4G2 192 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 AFAP1Q8N556 730 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 METTL27Q8N6F8 245 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PLD5Q8N7P1 536 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 C11orf44Q8N8P7 122 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 NIPA2Q8N8Q9 360 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 EIF1ADQ8N9N8 165 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TERB1Q8NA31 727 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 C9orf106Q8NAJ2 232 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM184AQ8NB25 1140 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 DRAXINQ8NBI3 349 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 LEMD2Q8NC56 503 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 RNF169Q8NCN4 708 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC44A5Q8NCS7 719 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CCNYQ8ND76 341 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 RBM15BQ8NDT2 890 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PSD4Q8NDX1 1056 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC17A8Q8NDX2 589 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SETD9Q8NE22 299 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PIK3C3Q8NEB9 887 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM46DQ8NEK8 389 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 AGBL3Q8NEM8 1001 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC24A4Q8NFF2 622 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 STEAP2Q8NFT2 490 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 DBF4BQ8NFT6 615 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CADM4Q8NFZ8 388 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 NEK11Q8NG66 645 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR6C4Q8NGE1 309 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR52L2PQ8NGH6 319 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR52K1Q8NGK4 314 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR52M1Q8NGK5 317 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR10S1Q8NGN2 331 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR8K3Q8NH51 312 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 EXD1Q8NHP7 514 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CFAP61Q8NHU2 1237 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 B4GALNT2Q8NHY0 566 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 NCOA7Q8NI08 942 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 EXOC6Q8TAG9 804 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 DNAJB14Q8TBM8 379 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 POC1BQ8TC44 478 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 RNF139Q8WU17 664 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 U2AF1L4Q8WU68 220 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CHURC1Q8WUH1 139 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PTPMT1Q8WUK0 201 aaPredicted RBP0.58□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms