RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 EFL1Q7Z2Z2 1120 aaKnown RBP14.03□□□□□ -0.16
NUP54-216ENST00000514901 LMNTD2Q8IXW0 634 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 NAGSQ8N159 534 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 ARL14Q8N4G2 192 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 BEND7Q8N7W2 519 aaPredicted RBP14.03□□□□□ -0.16
NUP54-216ENST00000514901 OR2L2Q8NH16 312 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 WDR48Q8TAF3 677 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 IFI44Q8TCB0 444 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 CALML6Q8TD86 181 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 ZNF669Q96BR6 464 aaPredicted RBP14.03□□□□□ -0.16
NUP54-216ENST00000514901 FCRL3Q96P31 734 aaPredicted RBP14.03□□□□□ -0.16
NUP54-216ENST00000514901 CCM2Q9BSQ5 444 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 DPH5Q9H2P9 285 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 OSGEPL1Q9H4B0 414 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 TBC1D29Q9UFV1 150 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 ACSL5Q9ULC5 683 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 VPS9D1Q9Y2B5 631 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 DNAJC16Q9Y2G8 782 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 FAM169AQ9Y6X4 670 aa14.03□□□□□ -0.16
NUP54-216ENST00000514901 ZCWPW2A0A1B0GU75 182 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 A6NCN8 305 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 EIF3HO15372 352 aaKnown RBP eCLIP14.02□□□□□ -0.17
NUP54-216ENST00000514901 SGTAO43765 313 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 SNX2O60749 519 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 NDUFS3O75489 264 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 OR56A5P0C7T3 313 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 OGNP20774 298 aaKnown RBP14.02□□□□□ -0.17
NUP54-216ENST00000514901 THOC5Q13769 683 aaKnown RBP14.02□□□□□ -0.17
NUP54-216ENST00000514901 PLA2G4EQ3MJ16 856 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 MSS51Q4VC12 460 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 SPANXN3Q5MJ09 141 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 METRNLQ641Q3 311 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 GUSBP11Q6P575 273 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 ZNF449Q6P9G9 518 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 SLC9B2Q86UD5 537 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 LRRC6Q86X45 466 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 AGGF1Q8N302 714 aaeCLIP14.02□□□□□ -0.17
NUP54-216ENST00000514901 SFRP1Q8N474 314 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 OTUD6BQ8N6M0 293 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.02□□□□□ -0.17
NUP54-216ENST00000514901 MAPK15Q8TD08 544 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 SH3KBP1Q96B97 665 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 LRRC1Q9BTT6 524 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 TSSK1BQ9BXA7 367 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 FOXP3Q9BZS1 431 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 ABCG4Q9H172 646 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 STN1Q9H668 368 aaKnown RBP14.02□□□□□ -0.17
NUP54-216ENST00000514901 PRDM8Q9NQV8 689 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 LRIT1Q9P2V4 623 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 UNC13CQ8NB66 2214 aa14.02□□□□□ -0.17
NUP54-216ENST00000514901 RHPN2P1A8MT19 583 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 PDZK1P1A8MUH7 402 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 E7ESA3 106 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 PRMT5O14744 637 aaPredicted RBP14.01□□□□□ -0.17
NUP54-216ENST00000514901 FTH1P02794 183 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 ADRB1P08588 477 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 MYF5P13349 255 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 XRCC1P18887 633 aaPredicted RBP14.01□□□□□ -0.17
NUP54-216ENST00000514901 ELK3P41970 407 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 HALP42357 657 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 GPR3P46089 330 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 FASLGP48023 281 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 FOXK2Q01167 660 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 PLOD1Q02809 727 aaPredicted RBP14.01□□□□□ -0.17
NUP54-216ENST00000514901 TYSND1Q2T9J0 566 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 CCDC157Q569K6 752 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 CENPUQ71F23 418 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 RAB44Q7Z6P3 723 aaPredicted RBP14.01□□□□□ -0.17
NUP54-216ENST00000514901 CACTIN-AS1Q8N1I8 211 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 GALNT15Q8N3T1 639 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 CLDN19Q8N6F1 224 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 PNPLA1Q8N8W4 532 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 HM13Q8TCT9 377 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 SEC14L1Q92503 715 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 ART4Q93070 314 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 FAM129AQ9BZQ8 928 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 PHACTR1Q9C0D0 580 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 SARS2Q9NP81 518 aaKnown RBP14.01□□□□□ -0.17
NUP54-216ENST00000514901 C20orf96Q9NUD7 363 aaPredicted RBP14.01□□□□□ -0.17
NUP54-216ENST00000514901 GRHL1Q9NZI5 618 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 MARCH4Q9P2E8 410 aaPredicted RBP14.01□□□□□ -0.17
NUP54-216ENST00000514901 ZC3H7BQ9UGR2 993 aaKnown RBP14.01□□□□□ -0.17
NUP54-216ENST00000514901 TEX264Q9Y6I9 313 aa14.01□□□□□ -0.17
NUP54-216ENST00000514901 NCOR2Q9Y618 2525 aa14□□□□□ -0.17
NUP54-216ENST00000514901 H3BMM5 538 aa14□□□□□ -0.17
NUP54-216ENST00000514901 ZNF500O60304 480 aaPredicted RBP14□□□□□ -0.17
NUP54-216ENST00000514901 OPA1O60313 960 aa14□□□□□ -0.17
NUP54-216ENST00000514901 OR1I1O60431 355 aa14□□□□□ -0.17
NUP54-216ENST00000514901 RPS3P23396 243 aaKnown RBP eCLIP14□□□□□ -0.17
NUP54-216ENST00000514901 PBLDP30039 288 aaPredicted RBP14□□□□□ -0.17
NUP54-216ENST00000514901 PLTPP55058 493 aa14□□□□□ -0.17
NUP54-216ENST00000514901 ADARP55265 1226 aaKnown RBP14□□□□□ -0.17
NUP54-216ENST00000514901 MAZP56270 477 aaKnown RBP14□□□□□ -0.17
NUP54-216ENST00000514901 PDIA2Q13087 525 aaKnown RBP14□□□□□ -0.17
NUP54-216ENST00000514901 RPA4Q13156 261 aa14□□□□□ -0.17
NUP54-216ENST00000514901 FRG1Q14331 258 aaKnown RBP14□□□□□ -0.17
NUP54-216ENST00000514901 NFE2L1Q14494 772 aa14□□□□□ -0.17
NUP54-216ENST00000514901 SEMA3AQ14563 771 aa14□□□□□ -0.17
NUP54-216ENST00000514901 CRYMQ14894 314 aa14□□□□□ -0.17
NUP54-216ENST00000514901 SMAD1Q15797 465 aaKnown RBP14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 234.4 ms