RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 WBP4O75554 376 aaKnown RBP12.54□□□□□ -0.4
USP53-209ENST00000514665 ANXA4P09525 319 aaPredicted RBP12.54□□□□□ -0.4
USP53-209ENST00000514665 PTGER3P43115 390 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 ZNF132P52740 706 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 DGKQP52824 942 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 ITGA1P56199 1179 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 ATG14Q6ZNE5 492 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 C15orf39Q6ZRI6 1047 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 SLC34A3Q8N130 599 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 CACTIN-AS1Q8N1I8 211 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 PIK3C3Q8NEB9 887 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 FAM83DQ9H4H8 585 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 POLR3BQ9NW08 1133 aaPredicted RBP12.54□□□□□ -0.4
USP53-209ENST00000514665 CENPXA8MT69 81 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 ISM1B1AKI9 464 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 FAM72CH0Y354 149 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 H3BNX3 289 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 TFECO14948 347 aaPredicted RBP12.54□□□□□ -0.4
USP53-209ENST00000514665 GUCY1B2O75343 617 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 ALDOAP04075 364 aaKnown RBP12.54□□□□□ -0.4
USP53-209ENST00000514665 IL6P05231 212 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 SLC7A1P30825 629 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 SRP54P61011 504 aaKnown RBP12.54□□□□□ -0.4
USP53-209ENST00000514665 STX4Q12846 297 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 FAM72AQ5TYM5 149 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 FAM72DQ6L9T8 149 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 PTCHD4Q6ZW05 846 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 C16orf62Q7Z3J2 963 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 METTL3Q86U44 580 aaKnown RBP12.54□□□□□ -0.4
USP53-209ENST00000514665 FAM72BQ86X60 149 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 GALNT15Q8N3T1 639 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 SLC13A3Q8WWT9 602 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 MCMBPQ9BTE3 642 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 OSBPL10Q9BXB5 764 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 MIOSQ9NXC5 875 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 ZNF232Q9UNY5 417 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 SQORQ9Y6N5 450 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 GABRDO14764 452 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 OR6B1O95007 311 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 SLC35G4P0C7Q5 338 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 KCNQ1P51787 676 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 HERVK_113P63132 956 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 SMARCB1Q12824 385 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 COX10Q12887 443 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 EGFLAMQ63HQ2 1017 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 OGFOD2Q6N063 350 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 ZNF438Q7Z4V0 828 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 CHPFQ8IZ52 775 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 CAMKK1Q8N5S9 505 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 CLDN19Q8N6F1 224 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 HTRA1Q92743 480 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 VMP1Q96GC9 406 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 PPP1R16AQ96I34 528 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 PHF12Q96QT6 1004 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 NODALQ96S42 347 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 MTERF1Q99551 399 aaKnown RBP12.53□□□□□ -0.4
USP53-209ENST00000514665 RBM4BQ9BQ04 359 aaKnown RBP12.53□□□□□ -0.4
USP53-209ENST00000514665 RBM4Q9BWF3 364 aaKnown RBP12.53□□□□□ -0.4
USP53-209ENST00000514665 ERVK-6Q9BXR3 956 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 OSBPL2Q9H1P3 480 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 CCNB1IP1Q9NPC3 277 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 RAPGEFL1Q9UHV5 662 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 TAF4O00268 1085 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 TOR1BO14657 336 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 SLC28A2O43868 658 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 NUDT14O95848 222 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 POU2F1P14859 743 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 SELPP16109 830 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 OGNP20774 298 aaKnown RBP12.53□□□□□ -0.4
USP53-209ENST00000514665 CTNNB1P35222 781 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 C2orf80Q0P641 193 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 PAFAH1B3Q15102 231 aaKnown RBP12.53□□□□□ -0.4
USP53-209ENST00000514665 ZSWIM7Q19AV6 140 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 NADK2Q4G0N4 442 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 SIRPB2Q5JXA9 342 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 CAPN13Q6MZZ7 669 aaPredicted RBP12.53□□□□□ -0.4
USP53-209ENST00000514665 R3HCC1LQ7Z5L2 792 aaKnown RBP12.53□□□□□ -0.4
USP53-209ENST00000514665 RBM23Q86U06 439 aaKnown RBP12.53□□□□□ -0.4
USP53-209ENST00000514665 SKA1Q96BD8 255 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 CLIP3Q96DZ5 547 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 CCSER2Q9H7U1 834 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 IMP3Q9NV31 184 aaKnown RBP12.53□□□□□ -0.4
USP53-209ENST00000514665 MAP4K5Q9Y4K4 846 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 FZD9O00144 591 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 PSMD11O00231 422 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 CDC7O00311 574 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 SEPT4O43236 478 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 FGF3P11487 239 aaPredicted RBP12.53□□□□□ -0.4
USP53-209ENST00000514665 RPL3P39023 403 aaKnown RBP12.53□□□□□ -0.4
USP53-209ENST00000514665 SSR2P43308 183 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 ATP12AP54707 1039 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 PURAQ00577 322 aaKnown RBP12.53□□□□□ -0.4
USP53-209ENST00000514665 SLC10A2Q12908 348 aaPredicted RBP12.53□□□□□ -0.4
USP53-209ENST00000514665 SFT2D3Q587I9 215 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 ANXA8L1Q5VT79 327 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 MSANTD2Q6P1R3 559 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 KCTD8Q6ZWB6 473 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 NEK10Q6ZWH5 1172 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 ZNF671Q8TAW3 534 aa12.53□□□□□ -0.4
USP53-209ENST00000514665 SLC7A6OSQ96CW6 309 aaPredicted RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms