RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 NCF4Q15080 339 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 RBM48Q5RL73 367 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 FBXL22Q6P050 247 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 CASP12Q6UXS9 341 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 CHST15Q7LFX5 561 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 MAVSQ7Z434 540 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 ANKRD46Q86W74 232 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 RASAL3Q86YV0 1011 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 ANKFN1Q8N957 763 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 TMIGD2Q96BF3 282 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 SLC45A3Q96JT2 553 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 MRGPRX2Q96LB1 330 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 FEM1AQ9BSK4 669 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 ZNF99A8MXY4 864 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 CDK14O94921 469 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 PAPSS2O95340 614 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 ESR1P03372 595 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 ALOX15P16050 662 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 C1QTNF8P60827 252 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 CDC42P60953 191 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 CACNG1Q06432 222 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 TAF1AQ15573 450 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 UNC50Q53HI1 259 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 LINGO4Q6UY18 593 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 KRT73Q86Y46 540 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 B3GALT6Q96L58 329 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 SLC29A1Q99808 456 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 MAGEH1Q9H213 219 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 SMOC2Q9H3U7 446 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 PTGDR2Q9Y5Y4 395 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 HMX2A2RU54 273 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 OR6C75A6NL08 312 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 SUV39H1O43463 412 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 SERPINA1P01009 418 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 KIR3DL1P43629 444 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 CAMK2GQ13555 558 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 MOGQ16653 247 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 LYPLAL1Q5VWZ2 237 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 CERS6Q6ZMG9 384 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 C14orf80Q86SX3 495 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 RAB42Q8N4Z0 105 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 FIBCD1Q8N539 461 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 SMYD1Q8NB12 490 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 ACVR1CQ8NER5 493 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 PROX1Q92786 737 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 ERLEC1Q96DZ1 483 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 NSUN5Q96P11 429 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 ZBED2Q9BTP6 218 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 CIPCQ9C0C6 399 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 NDEL1Q9GZM8 345 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 SMOXQ9NWM0 555 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 GMEB1Q9Y692 573 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 FOXD2O60548 495 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 SNAP29O95721 258 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 IL6P05231 212 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 TFPTP0C1Z6 253 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 ZNF182P17025 639 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 AQP1P29972 269 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 GPC1P35052 558 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 PTGER3P43115 390 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 SEPHS1P49903 392 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 GK3PQ14409 553 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 RAB39AQ14964 217 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 PHKG1Q16816 387 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 TJAP1Q5JTD0 557 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 USP45Q70EL2 814 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 AHSA2Q719I0 299 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 UTS2BQ765I0 119 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 DEPDC4Q8N2C3 294 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 OR5K1Q8NHB7 308 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 ZNF420Q8TAQ5 688 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 KIAA1191Q96A73 305 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 ADAMTS10Q9H324 1103 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 ZFYVE1Q9HBF4 777 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 GIN1Q9NXP7 522 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 UBAP1Q9NZ09 502 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 TMEM9Q9P0T7 183 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 EBF1Q9UH73 591 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 RIMS3Q9UJD0 308 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 KCNH4Q9UQ05 1017 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 TRIM17Q9Y577 477 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 ZFP37Q9Y6Q3 630 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 SNTNA6NMZ2 147 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 HNRNPCL2B2RXH8 293 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 SNPHO15079 494 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 ACSL4O60488 711 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 LRG1P02750 347 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 GSTM1P09488 218 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 ACVRL1P37023 503 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 ALDH3A2P51648 485 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 DMPKQ09013 629 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 ZNF792Q3KQV3 632 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 PDZK1Q5T2W1 519 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 TAPT1Q6NXT6 567 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 ZNF773Q6PK81 442 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 ZDHHC21Q8IVQ6 265 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 NAT16Q8N8M0 369 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 PHC3Q8NDX5 983 aa8.31□□□□□ -1.08
LIMCH1-216ENST00000512820 ELMO1Q92556 727 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms