RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 F9P00740 461 aa16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 MAP3K7CLP57077 242 aa16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 MTPNP58546 118 aa16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 SLC35A2P78381 396 aa16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 TIAL1Q01085 375 aaKnown RBP eCLIP16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 CLCA4Q14CN2 919 aa16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 VARS2Q5ST30 1063 aaKnown RBP16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 TUBA3EQ6PEY2 450 aa16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 ENPP6Q6UWR7 440 aa16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 ARMCX2Q7L311 632 aa16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 AADATQ8N5Z0 425 aa16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 LGALS12Q96DT0 336 aa16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 ZNF599Q96NL3 588 aa16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 RGS18Q9NS28 235 aa16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 PDCD11Q14690 1871 aaKnown RBP16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 PRMT5O14744 637 aaPredicted RBP16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 PRKD3O94806 890 aa16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 PAPSS2O95340 614 aaPredicted RBP16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 ANGPTL1O95841 491 aa16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 JUNDP17535 347 aa16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 ERVK-8P63133 956 aa16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 ZC3H12BQ5HYM0 836 aaKnown RBP16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 SPESP1Q6UW49 350 aa16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 NECAB2Q7Z6G3 386 aa16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 POC5Q8NA72 575 aa16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 FRS2Q8WU20 508 aa16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 PABPC5Q96DU9 382 aaKnown RBP16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 PPM1MQ96MI6 270 aa16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 MFSD1Q9H3U5 465 aa16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 MARCH4Q9P2E8 410 aaPredicted RBP16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 FBXO10Q9UK96 956 aa16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 UBQLN1Q9UMX0 589 aaKnown RBP16.9■□□□□ 0.3
SQSTM1-211ENST00000506690 TAF4O00268 1085 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 HS6ST1O60243 411 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 GUCY1B2O75343 617 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 PTTG1O95997 202 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 HOXA11P31270 313 aaPredicted RBP16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 MASP1P48740 699 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 RABGGTBP53611 331 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 WNT3AP56704 352 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 MN1Q10571 1320 aaPredicted RBP16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 LAPTM5Q13571 262 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 NPTX1Q15818 432 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 DCP2Q8IU60 420 aaKnown RBP16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 MCFD2Q8NI22 146 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 ZNF560Q96MR9 790 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 ZNF583Q96ND8 569 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 NUSAP1Q9BXS6 441 aaKnown RBP16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 EMILIN2Q9BXX0 1053 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 SEMA4BQ9NPR2 832 aaPredicted RBP16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 RBM22Q9NW64 420 aaKnown RBP eCLIP16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 TMEFF2Q9UIK5 374 aaPredicted RBP16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 NEUROG3Q9Y4Z2 214 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 CENPBD1B2RD01 187 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 SNX2O60749 519 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 CRCPO75575 148 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 DLGAP3O95886 979 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 SPNP16150 400 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 ZNF37AP17032 561 aaPredicted RBP16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 ST13P50502 369 aaKnown RBP16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 VAC14Q08AM6 782 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 PRKG2Q13237 762 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 RAPSNQ13702 412 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 ZNF549Q6P9A3 640 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 KDELC1Q6UW63 502 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 TMEM179BQ7Z7N9 219 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 ABI1Q8IZP0 508 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 OR2T11Q8NH01 316 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 TFB2MQ9H5Q4 396 aaKnown RBP16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 ATP13A1Q9HD20 1204 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 UTS2RQ9UKP6 389 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 CRYL1Q9Y2S2 319 aa16.89■□□□□ 0.29
SQSTM1-211ENST00000506690 MCM3APO60318 1980 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 FAM172BPA6NC97 362 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 PABPN1LA6NDY0 278 aaKnown RBP16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 ZBBXA8MT70 800 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 ARNTLO00327 626 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 BCKDKO14874 412 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 TBX1O43435 398 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 CD4P01730 458 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 CYP11A1P05108 521 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 WARSP23381 471 aaKnown RBP16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 DCTP40126 519 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 SERPINH1P50454 418 aaKnown RBP16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 SUOXP51687 545 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 COPZ1P61923 177 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 FADDQ13158 208 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 PCSK7Q16549 785 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 B3GNT8Q7Z7M8 397 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 HEATR4Q86WZ0 1026 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 FBXO30Q8TB52 745 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 RPL3LQ92901 407 aaKnown RBP16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 CNGB3Q9NQW8 809 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 TNFRSF10AO00220 468 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 GNGT2O14610 69 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 GOT2P00505 430 aaKnown RBP16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 SLC4A1P02730 911 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 ITGAMP11215 1152 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 PRKACGP22612 351 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms