RNA–Protein interactions for RNA: ENST00000504557.1

HOXC9-202, Transcript of homeobox C9, humanhuman

TSL 3

Gene HOXC9, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-202ENST00000504557 RAB6BQ9NRW1 208 aa14□□□□□ -0.17
HOXC9-202ENST00000504557 FOXJ2Q9P0K8 574 aa14□□□□□ -0.17
HOXC9-202ENST00000504557 EFCAB7A8K855 629 aa13.99□□□□□ -0.17
HOXC9-202ENST00000504557 GAS8O95995 478 aa13.99□□□□□ -0.17
HOXC9-202ENST00000504557 POLBP06746 335 aa13.99□□□□□ -0.17
HOXC9-202ENST00000504557 THRAP10827 490 aa13.99□□□□□ -0.17
HOXC9-202ENST00000504557 STIP1P31948 543 aaKnown RBP13.99□□□□□ -0.17
HOXC9-202ENST00000504557 HADHAP40939 763 aa13.99□□□□□ -0.17
HOXC9-202ENST00000504557 GRIA1P42261 906 aa13.99□□□□□ -0.17
HOXC9-202ENST00000504557 KCNJ1P48048 391 aa13.99□□□□□ -0.17
HOXC9-202ENST00000504557 GFERP55789 205 aa13.99□□□□□ -0.17
HOXC9-202ENST00000504557 UBE2IP63279 158 aaKnown RBP13.99□□□□□ -0.17
HOXC9-202ENST00000504557 DUS1LQ6P1R4 473 aaKnown RBP13.99□□□□□ -0.17
HOXC9-202ENST00000504557 TMEM71Q6P5X7 295 aa13.99□□□□□ -0.17
HOXC9-202ENST00000504557 IGF2-ASQ6U949 168 aa13.99□□□□□ -0.17
HOXC9-202ENST00000504557 TMEM26Q6ZUK4 368 aa13.99□□□□□ -0.17
HOXC9-202ENST00000504557 SNX20Q7Z614 316 aa13.99□□□□□ -0.17
HOXC9-202ENST00000504557 CLEC14AQ86T13 490 aa13.99□□□□□ -0.17
HOXC9-202ENST00000504557 ZFAND4Q86XD8 727 aa13.99□□□□□ -0.17
HOXC9-202ENST00000504557 ART4Q93070 314 aa13.99□□□□□ -0.17
HOXC9-202ENST00000504557 PMEPA1Q969W9 287 aa13.99□□□□□ -0.17
HOXC9-202ENST00000504557 ULK4Q96C45 1275 aa13.99□□□□□ -0.17
HOXC9-202ENST00000504557 TGM7Q96PF1 710 aa13.99□□□□□ -0.17
HOXC9-202ENST00000504557 FRMD8P1Q9BZ68 369 aaPredicted RBP13.99□□□□□ -0.17
HOXC9-202ENST00000504557 WWP1Q9H0M0 922 aa13.99□□□□□ -0.17
HOXC9-202ENST00000504557 ARNT2Q9HBZ2 717 aa13.99□□□□□ -0.17
HOXC9-202ENST00000504557 IMP3Q9NV31 184 aaKnown RBP13.99□□□□□ -0.17
HOXC9-202ENST00000504557 SMOXQ9NWM0 555 aa13.99□□□□□ -0.17
HOXC9-202ENST00000504557 OCIAD1Q9NX40 245 aa13.99□□□□□ -0.17
HOXC9-202ENST00000504557 FEZ2Q9UHY8 353 aaPredicted RBP13.99□□□□□ -0.17
HOXC9-202ENST00000504557 NBEAQ8NFP9 2946 aa13.99□□□□□ -0.17
HOXC9-202ENST00000504557 ZFHX4Q86UP3 3567 aa13.98□□□□□ -0.17
HOXC9-202ENST00000504557 OR51F1A6NGY5 319 aa13.98□□□□□ -0.17
HOXC9-202ENST00000504557 APRTP07741 180 aa13.98□□□□□ -0.17
HOXC9-202ENST00000504557 RALBP11234 206 aa13.98□□□□□ -0.17
HOXC9-202ENST00000504557 FGF3P11487 239 aaPredicted RBP13.98□□□□□ -0.17
HOXC9-202ENST00000504557 XRCC1P18887 633 aaPredicted RBP13.98□□□□□ -0.17
HOXC9-202ENST00000504557 FDFT1P37268 417 aa13.98□□□□□ -0.17
HOXC9-202ENST00000504557 BASP1P80723 227 aaKnown RBP13.98□□□□□ -0.17
HOXC9-202ENST00000504557 SRSF6Q13247 344 aaKnown RBP13.98□□□□□ -0.17
HOXC9-202ENST00000504557 GPR18Q14330 331 aa13.98□□□□□ -0.17
HOXC9-202ENST00000504557 GSE1Q14687 1217 aa13.98□□□□□ -0.17
HOXC9-202ENST00000504557 PLCL1Q15111 1095 aa13.98□□□□□ -0.17
HOXC9-202ENST00000504557 SIX1Q15475 284 aaPredicted RBP13.98□□□□□ -0.17
HOXC9-202ENST00000504557 TMEM164Q5U3C3 297 aa13.98□□□□□ -0.17
HOXC9-202ENST00000504557 LINC00523Q86TU6 105 aa13.98□□□□□ -0.17
HOXC9-202ENST00000504557 NXPE1Q8N323 547 aa13.98□□□□□ -0.17
HOXC9-202ENST00000504557 AVL9Q8NBF6 648 aa13.98□□□□□ -0.17
HOXC9-202ENST00000504557 AGBL5Q8NDL9 886 aa13.98□□□□□ -0.17
HOXC9-202ENST00000504557 GPR150Q8NGU9 434 aa13.98□□□□□ -0.17
HOXC9-202ENST00000504557 DTX3LQ8TDB6 740 aa13.98□□□□□ -0.17
HOXC9-202ENST00000504557 TMEM159Q96B96 161 aa13.98□□□□□ -0.17
HOXC9-202ENST00000504557 RTP4Q96DX8 246 aa13.98□□□□□ -0.17
HOXC9-202ENST00000504557 COPS8Q99627 209 aa13.98□□□□□ -0.17
HOXC9-202ENST00000504557 CTRCQ99895 268 aa13.98□□□□□ -0.17
HOXC9-202ENST00000504557 NLE1Q9NVX2 485 aaPredicted RBP13.98□□□□□ -0.17
HOXC9-202ENST00000504557 SLC39A1Q9NY26 324 aa13.98□□□□□ -0.17
HOXC9-202ENST00000504557 CACNA1GO43497 2377 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 ITPR1Q14643 2758 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 LILRA5A6NI73 299 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 C9orf172C9J069 976 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 CFAP99D6REC4 459 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 HGSO14964 777 aaPredicted RBP13.97□□□□□ -0.17
HOXC9-202ENST00000504557 RASSF9O75901 435 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 UBXN7O94888 489 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 RPL22P35268 128 aaKnown RBP13.97□□□□□ -0.17
HOXC9-202ENST00000504557 MLLT3P42568 568 aaPredicted RBP13.97□□□□□ -0.17
HOXC9-202ENST00000504557 VPS41P49754 854 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 SEPHS1P49903 392 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 ARSDP51689 593 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 EPHA4P54764 986 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 TMPRSS3P57727 454 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 CDH17Q12864 832 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 CLN3Q13286 438 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 TRA2AQ13595 282 aaKnown RBP eCLIP13.97□□□□□ -0.17
HOXC9-202ENST00000504557 TRIP13Q15645 432 aaPredicted RBP13.97□□□□□ -0.17
HOXC9-202ENST00000504557 RPE65Q16518 533 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 CCNG2Q16589 344 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 CLPPQ16740 277 aaPredicted RBP13.97□□□□□ -0.17
HOXC9-202ENST00000504557 IRGCQ6NXR0 463 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 ABRAXAS1Q6UWZ7 409 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 ZNF662Q6ZS27 426 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 VASH2Q86V25 355 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 SERPINA9Q86WD7 417 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 KLHDC8BQ8IXV7 354 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 CFAP206Q8IYR0 622 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 LILRA3Q8N6C8 439 aaPredicted RBP13.97□□□□□ -0.17
HOXC9-202ENST00000504557 STYXQ8WUJ0 223 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 RSC1A1Q92681 617 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 CDKN2AIPNLQ96HQ2 116 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 C12orf66Q96MD2 445 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 DPYSL5Q9BPU6 564 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 DPH1Q9BZG8 443 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 PRORYQ9H606 182 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 POT1Q9NUX5 634 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 TRMT1Q9NXH9 659 aaKnown RBP13.97□□□□□ -0.17
HOXC9-202ENST00000504557 PAK5Q9P286 719 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 PCDHGA7Q9Y5G6 932 aa13.97□□□□□ -0.17
HOXC9-202ENST00000504557 MGAT4DA6NG13 374 aa13.96□□□□□ -0.17
HOXC9-202ENST00000504557 PRR19A6NJB7 356 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms