RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ATAD3AQ9NVI7 634 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 TMEM181Q9P2C4 612 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 KLHL8Q9P2G9 620 aaPredicted RBP3.45□□□□□ -1.86
VPS50-219ENST00000495039 FBXL2Q9UKC9 423 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 KCNJ14Q9UNX9 436 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 CSAG2Q9Y5P2 127 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 KCNE2Q9Y6J6 123 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 PIAS3Q9Y6X2 628 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 STK36Q9NRP7 1315 aa3.44□□□□□ -1.86
VPS50-219ENST00000495039 FAM237BA0A1B0GVD1 139 aa3.44□□□□□ -1.86
VPS50-219ENST00000495039 PI4KAP2A4QPH2 592 aa3.44□□□□□ -1.86
VPS50-219ENST00000495039 PGPEP1LA6NFU8 196 aa3.44□□□□□ -1.86
VPS50-219ENST00000495039 USO1O60763 962 aaKnown RBP3.44□□□□□ -1.86
VPS50-219ENST00000495039 PAGE4O60829 102 aa3.44□□□□□ -1.86
VPS50-219ENST00000495039 DDX58O95786 925 aaKnown RBP3.44□□□□□ -1.86
VPS50-219ENST00000495039 PRG2P13727 222 aa3.44□□□□□ -1.86
VPS50-219ENST00000495039 ZNF182P17025 639 aaPredicted RBP3.44□□□□□ -1.86
VPS50-219ENST00000495039 SHC1P29353 583 aa3.44□□□□□ -1.86
VPS50-219ENST00000495039 TLX1P31314 330 aaPredicted RBP3.44□□□□□ -1.86
VPS50-219ENST00000495039 ARL3P36405 182 aa3.44□□□□□ -1.86
VPS50-219ENST00000495039 PBX3P40426 434 aa3.44□□□□□ -1.86
VPS50-219ENST00000495039 SETQ01105 290 aaPredicted RBP3.44□□□□□ -1.86
VPS50-219ENST00000495039 CSTF3Q12996 717 aaKnown RBP3.44□□□□□ -1.86
VPS50-219ENST00000495039 MAMLD1Q13495 774 aa3.44□□□□□ -1.86
VPS50-219ENST00000495039 USP41Q3LFD5 358 aa3.44□□□□□ -1.86
VPS50-219ENST00000495039 KRTCAP3Q53RY4 240 aa3.44□□□□□ -1.86
VPS50-219ENST00000495039 ADAMTSL4-AS1Q5T5F5 129 aa3.44□□□□□ -1.86
VPS50-219ENST00000495039 C4orf50Q6ZRC1 276 aa3.44□□□□□ -1.86
VPS50-219ENST00000495039 C1orf122Q6ZSJ8 110 aa3.44□□□□□ -1.86
VPS50-219ENST00000495039 MFSD6Q6ZSS7 791 aa3.44□□□□□ -1.86
VPS50-219ENST00000495039 BEST3Q8N1M1 668 aa3.44□□□□□ -1.86
VPS50-219ENST00000495039 FRMD1Q8N878 549 aa3.44□□□□□ -1.86
VPS50-219ENST00000495039 ZNRF4Q8WWF5 429 aa3.44□□□□□ -1.86
VPS50-219ENST00000495039 ARHGEF2Q92974 986 aaKnown RBP3.44□□□□□ -1.86
VPS50-219ENST00000495039 MMABQ96EY8 250 aaPredicted RBP3.44□□□□□ -1.86
VPS50-219ENST00000495039 PERPQ96FX8 193 aa3.44□□□□□ -1.86
VPS50-219ENST00000495039 GMPPAQ96IJ6 420 aaPredicted RBP3.44□□□□□ -1.86
VPS50-219ENST00000495039 TMEM47Q9BQJ4 181 aa3.44□□□□□ -1.86
VPS50-219ENST00000495039 LRMDAQ9H2I8 198 aa3.44□□□□□ -1.86
VPS50-219ENST00000495039 SCPEP1Q9HB40 452 aa3.44□□□□□ -1.86
VPS50-219ENST00000495039 LAS1LQ9Y4W2 734 aaKnown RBP3.44□□□□□ -1.86
VPS50-219ENST00000495039 KLF2Q9Y5W3 355 aaPredicted RBP3.44□□□□□ -1.86
VPS50-219ENST00000495039 PRR32B1ATL7 298 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 SLCO1B7G3V0H7 640 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 NKX2-2O95096 273 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 IPO7O95373 1038 aaKnown RBP3.43□□□□□ -1.86
VPS50-219ENST00000495039 CLPTM1O96005 669 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 EIF2S1P05198 315 aaKnown RBP3.43□□□□□ -1.86
VPS50-219ENST00000495039 FAM157CP0CG43 387 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 IL7RP16871 459 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 GNAZP19086 355 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 MSH3P20585 1137 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 CAPN3P20807 821 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 RXRGP48443 463 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 ARF3P61204 181 aaPredicted RBP3.43□□□□□ -1.86
VPS50-219ENST00000495039 DCAF7P61962 342 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 KCNJ10P78508 379 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 COG7P83436 770 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 ARF1P84077 181 aaKnown RBP3.43□□□□□ -1.86
VPS50-219ENST00000495039 EIF4A2Q14240 407 aaKnown RBP3.43□□□□□ -1.86
VPS50-219ENST00000495039 MED22Q15528 200 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 MAPRE1Q15691 268 aaKnown RBP3.43□□□□□ -1.86
VPS50-219ENST00000495039 DECR1Q16698 335 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 MYLK3Q32MK0 819 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 HIST2H2BDQ6DRA6 164 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 CYP20A1Q6UW02 462 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 QSOX2Q6ZRP7 698 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 PXKQ7Z7A4 578 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 CCDC13Q8IYE1 715 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 FBXL16Q8N461 479 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 MRGPRDQ8TDS7 321 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 PHF21AQ96BD5 680 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 HARBI1Q96MB7 349 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 WDFY2Q96P53 400 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 SEBOXQ9HB31 216 aaPredicted RBP3.43□□□□□ -1.86
VPS50-219ENST00000495039 CNOT8Q9UFF9 292 aaKnown RBP3.43□□□□□ -1.86
VPS50-219ENST00000495039 PNMA2Q9UL42 364 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 KIAA1210Q9ULL0 1709 aa3.43□□□□□ -1.86
VPS50-219ENST00000495039 OR5K3A6NET4 321 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 ZBED4O75132 1171 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 SLC25A12O75746 678 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 MLYCDO95822 493 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 SCGB1D1O95968 90 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 ACADMP11310 421 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 LAMP2P13473 410 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 MCCP23508 829 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 CCR10P46092 362 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 F2RL1P55085 397 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 PPARDQ03181 441 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 CEBPZQ03701 1054 aaKnown RBP3.42□□□□□ -1.86
VPS50-219ENST00000495039 MBTD1Q05BQ5 628 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 NIPAL4Q0D2K0 466 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 ENPP2Q13822 863 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 SIM2Q14190 667 aaPredicted RBP3.42□□□□□ -1.86
VPS50-219ENST00000495039 RALBP1Q15311 655 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 CXorf66Q5JRM2 361 aaPredicted RBP3.42□□□□□ -1.86
VPS50-219ENST00000495039 DCST1Q5T197 706 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 SNX30Q5VWJ9 437 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 C18orf63Q68DL7 685 aa3.42□□□□□ -1.86
VPS50-219ENST00000495039 SIGIRRQ6IA17 410 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms