RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 DDX3YO15523 660 aaKnown RBP12.39□□□□□ -0.43
SKA1-205ENST00000494518 AKR1B10O60218 316 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 NTRK1P04629 796 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 TMEM253P0C7T8 217 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 CCNYL3P0C7X3 344 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 EBLN1P0CF75 366 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 FGF5P12034 268 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 FOLR1P15328 257 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 PECAM1P16284 738 aaPredicted RBP12.39□□□□□ -0.43
SKA1-205ENST00000494518 NFKB1P19838 968 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 CD68P34810 354 aaPredicted RBP12.39□□□□□ -0.43
SKA1-205ENST00000494518 HALP42357 657 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 ARCN1P48444 511 aaKnown RBP12.39□□□□□ -0.43
SKA1-205ENST00000494518 KLRB1Q12918 225 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 CHAF1BQ13112 559 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 TUBB3Q13509 450 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 PLCL1Q15111 1095 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 CHRNA6Q15825 494 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 TEX44Q53QW1 395 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 ODF2Q5BJF6 829 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 AGAP9Q5VTM2 703 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 KAZNQ674X7 775 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 DUS1LQ6P1R4 473 aaKnown RBP12.39□□□□□ -0.43
SKA1-205ENST00000494518 FAM199XQ6PEV8 388 aaPredicted RBP12.39□□□□□ -0.43
SKA1-205ENST00000494518 MFSD7Q6UXD7 560 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 PPP1R3BQ86XI6 285 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 TEX19Q8NA77 164 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 SIDT2Q8NBJ9 832 aaKnown RBP12.39□□□□□ -0.43
SKA1-205ENST00000494518 KLHL6Q8WZ60 621 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 HAUS1Q96CS2 278 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 IQCDQ96DY2 449 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 ZDHHC12Q96GR4 267 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 TTC25Q96NG3 672 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 VPS35Q96QK1 796 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 TLK1Q9UKI8 766 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 MAN2B2Q9Y2E5 1009 aa12.39□□□□□ -0.43
SKA1-205ENST00000494518 HIVEP3Q5T1R4 2406 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 TOX3O15405 576 aaPredicted RBP12.38□□□□□ -0.43
SKA1-205ENST00000494518 CREG1O75629 220 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 RFPL1O75677 317 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 POP7O75817 140 aaKnown RBP12.38□□□□□ -0.43
SKA1-205ENST00000494518 PDGFAP04085 211 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 VCLP18206 1134 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 NELFEP18615 380 aaKnown RBP12.38□□□□□ -0.43
SKA1-205ENST00000494518 HNRNPH3P31942 346 aaKnown RBP12.38□□□□□ -0.43
SKA1-205ENST00000494518 SPAM1P38567 509 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 WNT3AP56704 352 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 NFE2L1Q14494 772 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 IL11RAQ14626 422 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 PTPRCAPQ14761 206 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 RPE65Q16518 533 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 PPP2R5EQ16537 467 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 ASTE1Q2TB18 679 aaPredicted RBP12.38□□□□□ -0.43
SKA1-205ENST00000494518 CRTC2Q53ET0 693 aaPredicted RBP12.38□□□□□ -0.43
SKA1-205ENST00000494518 SIRPB2Q5JXA9 342 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 CPZQ66K79 652 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 PWWP2BQ6NUJ5 590 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 FBXO38Q6PIJ6 1188 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 KDELC1Q6UW63 502 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 ASB18Q6ZVZ8 466 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 DET1Q7L5Y6 550 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 BEND7Q8N7W2 519 aaPredicted RBP12.38□□□□□ -0.43
SKA1-205ENST00000494518 RASGEF1AQ8N9B8 481 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 IPMKQ8NFU5 416 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 BLOC1S5Q8TDH9 187 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 MIB2Q96AX9 1013 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 TEKT5Q96M29 485 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 CHP1Q99653 195 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 MAP3K3Q99759 626 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 TRIM55Q9BYV6 548 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 ACTL8Q9H568 366 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 IL26Q9NPH9 171 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 LHX9Q9NQ69 397 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 IMP3Q9NV31 184 aaKnown RBP12.38□□□□□ -0.43
SKA1-205ENST00000494518 LCMT1Q9UIC8 334 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 KCND3Q9UK17 655 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 RARRES3Q9UL19 164 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 PADI1Q9ULC6 663 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.38□□□□□ -0.43
SKA1-205ENST00000494518 SNRNP200O75643 2136 aaKnown RBP12.38□□□□□ -0.43
SKA1-205ENST00000494518 FER1L5A0AVI2 2057 aa12.38□□□□□ -0.43
SKA1-205ENST00000494518 ZNF487B1APH4 448 aa12.37□□□□□ -0.43
SKA1-205ENST00000494518 ZFXP17010 805 aaPredicted RBP12.37□□□□□ -0.43
SKA1-205ENST00000494518 FECHP22830 423 aa12.37□□□□□ -0.43
SKA1-205ENST00000494518 ARL4DP49703 201 aa12.37□□□□□ -0.43
SKA1-205ENST00000494518 WASHC5Q12768 1159 aa12.37□□□□□ -0.43
SKA1-205ENST00000494518 PRKD1Q15139 912 aaPredicted RBP12.37□□□□□ -0.43
SKA1-205ENST00000494518 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.37□□□□□ -0.43
SKA1-205ENST00000494518 DNTTIP2Q5QJE6 756 aaKnown RBP12.37□□□□□ -0.43
SKA1-205ENST00000494518 TMEM220Q6QAJ8 160 aa12.37□□□□□ -0.43
SKA1-205ENST00000494518 WASH2PQ6VEQ5 465 aa12.37□□□□□ -0.43
SKA1-205ENST00000494518 GLT6D1Q7Z4J2 308 aa12.37□□□□□ -0.43
SKA1-205ENST00000494518 ZC3H18Q86VM9 953 aaKnown RBP12.37□□□□□ -0.43
SKA1-205ENST00000494518 AMZ2Q86W34 360 aa12.37□□□□□ -0.43
SKA1-205ENST00000494518 RBM12BQ8IXT5 1001 aaKnown RBP12.37□□□□□ -0.43
SKA1-205ENST00000494518 TFB1MQ8WVM0 346 aaKnown RBP12.37□□□□□ -0.43
SKA1-205ENST00000494518 OXNAD1Q96HP4 312 aaPredicted RBP12.37□□□□□ -0.43
SKA1-205ENST00000494518 MRGPRX2Q96LB1 330 aa12.37□□□□□ -0.43
SKA1-205ENST00000494518 PPM1MQ96MI6 270 aa12.37□□□□□ -0.43
SKA1-205ENST00000494518 GOLPH3Q9H4A6 298 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms