RNA–Protein interactions for RNA: ENST00000493161.1

SAMM50-204, Transcript of SAMM50 sorting and assembly machinery component, human

TSL 3

Gene SAMM50, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SAMM50-204	ENST00000493161	FARSA	Q9Y285	508 aa	Known RBP	13.4	□□□□□ -0.26
SAMM50-204	ENST00000493161	PCDHGA9	Q9Y5G4	932 aa	Known RBP	13.4	□□□□□ -0.26
SAMM50-204	ENST00000493161	CFAP20	Q9Y6A4	193 aa	Known RBP	13.4	□□□□□ -0.26
SAMM50-204	ENST00000493161	PCSK5	Q92824	1860 aa		13.4	□□□□□ -0.26
SAMM50-204	ENST00000493161	MED13	Q9UHV7	2174 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	UGT1A9	O60656	530 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	SCRG1	O75711	98 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	POP7	O75817	140 aa	Known RBP	13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	PROSC	O94903	275 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	UGT1A6	P19224	532 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	UGT1A1	P22309	533 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	UGT1A4	P22310	534 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	KDELR1	P24390	212 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	CTSC	P53634	463 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	RPS15	P62841	145 aa	Known RBP	13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	ACY1	Q03154	408 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	AP1B1	Q10567	949 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	NR1I3	Q14994	352 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	NFKBIB	Q15653	356 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	FILIP1L	Q4L180	1135 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	JMJD6	Q6NYC1	403 aa	Predicted RBP	13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	NPNT	Q6UXI9	565 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	ZNF517	Q6ZMY9	492 aa	Predicted RBP	13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	NT5DC3	Q86UY8	548 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	D2HGDH	Q8N465	521 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	RASGEF1A	Q8N9B8	481 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	GDAP1	Q8TB36	358 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	ADAMTS17	Q8TE56	1095 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	NAT14	Q8WUY8	206 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	VPS35	Q96QK1	796 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	CHST8	Q9H2A9	424 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	UGT1A7	Q9HAW7	530 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	UGT1A10	Q9HAW8	530 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	UGT1A8	Q9HAW9	530 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	RAD18	Q9NS91	495 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	UBP1	Q9NZI7	540 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	HEY1	Q9Y5J3	304 aa		13.39	□□□□□ -0.27
SAMM50-204	ENST00000493161	C3orf70	A6NLC5	250 aa	Predicted RBP	13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	CEACAM4	O75871	244 aa		13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	LCA5L	O95447	670 aa		13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	CLDN1	O95832	211 aa		13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	HAL	P42357	657 aa		13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	ARCN1	P48444	511 aa	Known RBP	13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	ITGA1	P56199	1179 aa		13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	HSD11B2	P80365	405 aa		13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	NFE2L1	Q14494	772 aa		13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	PLCL1	Q15111	1095 aa		13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	DNTTIP2	Q5QJE6	756 aa	Known RBP	13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	DUS1L	Q6P1R4	473 aa	Known RBP	13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	ALKBH5	Q6P6C2	394 aa	Known RBP	13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	CYB5D1	Q6P9G0	228 aa		13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	AMZ2	Q86W34	360 aa		13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	TMEM126B	Q8IUX1	230 aa		13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	MAP7D3	Q8IWC1	876 aa		13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	FDCSP	Q8NFU4	85 aa		13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	PRR7	Q8TB68	274 aa		13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	ZNF501	Q96CX3	271 aa	Predicted RBP	13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	C19orf60	Q96EN9	201 aa		13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	TCTN2	Q96GX1	697 aa		13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	NUDT9	Q9BW91	350 aa		13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	PACSIN1	Q9BY11	444 aa		13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	SLC25A51	Q9H1U9	297 aa		13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	IL26	Q9NPH9	171 aa		13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	CTTNBP2NL	Q9P2B4	639 aa		13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	NENF	Q9UMX5	172 aa		13.38	□□□□□ -0.27
SAMM50-204	ENST00000493161	ITPR2	Q14571	2701 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	UBA6	A0AVT1	1052 aa	Predicted RBP	13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	OR5K3	A6NET4	321 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	TLCD2	A6NGC4	264 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161		A6NL46	340 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	OR2AG2	A6NM03	316 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	ZNF185	O15231	689 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	BUD23	O43709	281 aa	Known RBP	13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	KRT86	O43790	486 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	CPNE3	O75131	537 aa	Known RBP	13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	PMPCB	O75439	489 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	NDST3	O95803	873 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	SERPING1	P05155	500 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	VCL	P18206	1134 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	LPO	P22079	712 aa	Predicted RBP	13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	PBLD	P30039	288 aa	Predicted RBP	13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	ARL4D	P49703	201 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	TUBB4B	P68371	445 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	DMPK	Q09013	629 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	RAPSN	Q13702	412 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	TUBB2A	Q13885	445 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	GTF2H3	Q13889	308 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	CHRNA6	Q15825	494 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	FIGN	Q5HY92	759 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	PLEKHS1	Q5SXH7	462 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	ZFYVE27	Q5T4F4	411 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	IZUMO3	Q5VZ72	239 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	SLC6A19	Q695T7	634 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	TMEM220	Q6QAJ8	160 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	BPHL	Q86WA6	291 aa	Predicted RBP	13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	KMT5C	Q86Y97	462 aa		13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	BEND7	Q8N7W2	519 aa	Predicted RBP	13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	RBMXL3	Q8N7X1	1067 aa	Known RBP	13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	ENDOV	Q8N8Q3	282 aa	Known RBP	13.37	□□□□□ -0.27
SAMM50-204	ENST00000493161	CPLX3	Q8WVH0	158 aa		13.37	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms