RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 NFKB1P19838 968 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 UGT1A1P22309 533 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 UGT1A4P22310 534 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 CHRNA4P43681 627 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 PMS2P54278 862 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 WNT3AP56704 352 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 WASHC5Q12768 1159 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 TUBB3Q13509 450 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 NFE2L1Q14494 772 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 KCNAB1Q14722 419 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 RPE65Q16518 533 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 ODF2Q5BJF6 829 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 PWWP2BQ6NUJ5 590 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 FAM151BQ6UXP7 276 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 AMZ2Q86W34 360 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 RHOT1Q8IXI2 618 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 RASGEF1AQ8N9B8 481 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 SIDT2Q8NBJ9 832 aaKnown RBP12.14□□□□□ -0.47
CPSF3-204ENST00000489403 DDHD1Q8NEL9 900 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 OR8K1Q8NGG5 319 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 DTX3LQ8TDB6 740 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 UBXN4Q92575 508 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 TTC25Q96NG3 672 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 RUFY1Q96T51 708 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 CHP1Q99653 195 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 MAP3K3Q99759 626 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 TWSG1Q9GZX9 223 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 TRABDQ9H4I3 376 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 UGT1A7Q9HAW7 530 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 UGT1A10Q9HAW8 530 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 UGT1A8Q9HAW9 530 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 PDE7BQ9NP56 450 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 DDX56Q9NY93 547 aaKnown RBP12.14□□□□□ -0.47
CPSF3-204ENST00000489403 IL17CQ9P0M4 197 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 RARRES3Q9UL19 164 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 PADI1Q9ULC6 663 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 PSMD13Q9UNM6 376 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 MAST4O15021 2626 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 OR2AG2A6NM03 316 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 C21orf140B9A014 251 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 F5H423 210 aaPredicted RBP12.13□□□□□ -0.47
CPSF3-204ENST00000489403 GAPDHSO14556 408 aaPredicted RBP12.13□□□□□ -0.47
CPSF3-204ENST00000489403 BUD23O43709 281 aaKnown RBP12.13□□□□□ -0.47
CPSF3-204ENST00000489403 POP7O75817 140 aaKnown RBP12.13□□□□□ -0.47
CPSF3-204ENST00000489403 RECKO95980 971 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 PDGFAP04085 211 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 EBLN1P0CF75 366 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 TNNT1P13805 278 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 CDKN2BP42772 138 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 SLC1A1P43005 524 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 CD97P48960 835 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 NR2C2P49116 596 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 MLLT10P55197 1068 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 TRIM14Q14142 442 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 CHRNA6Q15825 494 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 SIRPB2Q5JXA9 342 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 LDLRAP1Q5SW96 308 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 ZDHHC20Q5W0Z9 365 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 CERS6Q6ZMG9 384 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 ASB18Q6ZVZ8 466 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 GLT6D1Q7Z4J2 308 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 SLC25A41Q8N5S1 370 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 TEX19Q8NA77 164 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 BLOC1S5Q8TDH9 187 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 TFB1MQ8WVM0 346 aaKnown RBP12.13□□□□□ -0.47
CPSF3-204ENST00000489403 OXNAD1Q96HP4 312 aaPredicted RBP12.13□□□□□ -0.47
CPSF3-204ENST00000489403 MRGPRX2Q96LB1 330 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 ZCCHC2Q9C0B9 1178 aaKnown RBP12.13□□□□□ -0.47
CPSF3-204ENST00000489403 ACTL8Q9H568 366 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 AKIRIN1Q9H9L7 192 aaPredicted RBP12.13□□□□□ -0.47
CPSF3-204ENST00000489403 ABHD10Q9NUJ1 306 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 KLHL8Q9P2G9 620 aaPredicted RBP12.13□□□□□ -0.47
CPSF3-204ENST00000489403 TLK1Q9UKI8 766 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 MAN2B2Q9Y2E5 1009 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 CFAP20Q9Y6A4 193 aaKnown RBP12.13□□□□□ -0.47
CPSF3-204ENST00000489403 NBPF19A0A087WUL8 3843 aa12.13□□□□□ -0.47
CPSF3-204ENST00000489403 TNRC6AQ8NDV7 1962 aaKnown RBP12.12□□□□□ -0.47
CPSF3-204ENST00000489403 GLYATL1P3A0A0U1RQE8 302 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 PIPSLA2A3N6 862 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 CST8O60676 142 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 DNAJB5O75953 348 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 EPOP01588 193 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 NTRK1P04629 796 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 MTHFD1P11586 935 aaKnown RBP12.12□□□□□ -0.47
CPSF3-204ENST00000489403 COMTP21964 271 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 PBLDP30039 288 aaPredicted RBP12.12□□□□□ -0.47
CPSF3-204ENST00000489403 RPS18P62269 152 aaKnown RBP12.12□□□□□ -0.47
CPSF3-204ENST00000489403 ACY1Q03154 408 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 ADCY2Q08462 1091 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 SEMA5AQ13591 1074 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 ITGA9Q13797 1035 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 PLCL1Q15111 1095 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 LLGL1Q15334 1064 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 SLC1A5Q15758 541 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 PPP2R5EQ16537 467 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 TAZQ16635 292 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 GPRC6AQ5T6X5 926 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 KAZNQ674X7 775 aa12.12□□□□□ -0.47
CPSF3-204ENST00000489403 DUS1LQ6P1R4 473 aaKnown RBP12.12□□□□□ -0.47
CPSF3-204ENST00000489403 FAM199XQ6PEV8 388 aaPredicted RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms