RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 CHRNB2P17787 502 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 ACADLP28330 430 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 PIGAP37287 484 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 TNNT3P45378 269 aaPredicted RBP4.04□□□□□ -1.76
PTCD3-216ENST00000487043 PROK1P58294 105 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 MRPS34P82930 218 aaKnown RBP4.04□□□□□ -1.76
PTCD3-216ENST00000487043 ID2Q02363 134 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 ALCAMQ13740 583 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 IL11RAQ14626 422 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 KRBOX4Q5JUW0 171 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 RARS2Q5T160 578 aaKnown RBP4.04□□□□□ -1.76
PTCD3-216ENST00000487043 ASPHD1Q5U4P2 390 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 CASC1Q6TDU7 716 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 ZNF788Q6ZQV5 615 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 DPPA4Q7L190 304 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 CHST3Q7LGC8 479 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 PALB2Q86YC2 1186 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 THNSL1Q8IYQ7 743 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 HACE1Q8IYU2 909 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 GALNT16Q8N428 558 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 GOT1L1Q8NHS2 421 aaPredicted RBP4.04□□□□□ -1.76
PTCD3-216ENST00000487043 ARRDC2Q8TBH0 407 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 GPT2Q8TD30 523 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 SLC35F5Q8WV83 523 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 MRPS27Q92552 414 aaKnown RBP4.04□□□□□ -1.76
PTCD3-216ENST00000487043 MSI2Q96DH6 328 aaKnown RBP4.04□□□□□ -1.76
PTCD3-216ENST00000487043 SIPA1Q96FS4 1042 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 VMP1Q96GC9 406 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 CEP295NLQ96MC4 621 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 JAKMIP1Q96N16 626 aaKnown RBP4.04□□□□□ -1.76
PTCD3-216ENST00000487043 NUDCD1Q96RS6 583 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 CDRT15Q96T59 188 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 ACOX2Q99424 681 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 MSTO1Q9BUK6 570 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 BOLA2Q9H3K6 86 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 PIGMQ9H3S5 423 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 KLHL31Q9H511 634 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 MAP6D1Q9H9H5 199 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 HINT3Q9NQE9 182 aaKnown RBP4.04□□□□□ -1.76
PTCD3-216ENST00000487043 MTMR10Q9NXD2 777 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 MSRB1Q9NZV6 116 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 COPG2Q9UBF2 871 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 AMACRQ9UHK6 382 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 FBXW11Q9UKB1 542 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 ZNF609O15014 1411 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 COL4A1P02462 1669 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 LRP5O75197 1615 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 TAF1P21675 1872 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 GPR75-ASB3A0A0A6YYF3 556 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 A0A0G2JK05 382 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 KDM4EB2RXH2 506 aaPredicted RBP4.03□□□□□ -1.76
PTCD3-216ENST00000487043 H0YIN7 160 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 HIP1O00291 1037 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 PPP6CO00743 305 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 ADAM10O14672 748 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 CLGNO14967 610 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 DAB1O75553 588 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 NDUFB4O95168 129 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 FTCDO95954 541 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 PRKCGP05129 697 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 UQCRFS1P1P0C7P4 283 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 G6PDP11413 515 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 MUTP22033 750 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 MYF6P23409 242 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 CHMLP26374 656 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 CHATP28329 748 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 HOXD9P28356 352 aaPredicted RBP4.03□□□□□ -1.76
PTCD3-216ENST00000487043 ADORA1P30542 326 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 MSH2P43246 934 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 GPR143P51810 404 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 SLC10A2Q12908 348 aaPredicted RBP4.03□□□□□ -1.76
PTCD3-216ENST00000487043 FOXF2Q12947 444 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 LAMB3Q13751 1172 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 NEDD9Q14511 834 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 PNLIPRP3Q17RR3 467 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 DCAF6Q58WW2 860 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 CAVIN4Q5BKX8 364 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 ZNF805Q5CZA5 627 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 NUGGCQ68CJ6 796 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 SIGIRRQ6IA17 410 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 PLEKHA7Q6IQ23 1121 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 ANKRD54Q6NXT1 300 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 MTSS1LQ765P7 747 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 CCDC186Q7Z3E2 898 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 SDCCAG8Q86SQ7 713 aaPredicted RBP4.03□□□□□ -1.76
PTCD3-216ENST00000487043 TSPAN33Q86UF1 283 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 OR8H3Q8N146 312 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 GUF1Q8N442 669 aaKnown RBP4.03□□□□□ -1.76
PTCD3-216ENST00000487043 SPATA6LQ8N4H0 392 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 TEX45Q8NA69 505 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 FAM98AQ8NCA5 519 aaKnown RBP4.03□□□□□ -1.76
PTCD3-216ENST00000487043 AGBL3Q8NEM8 1001 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 PTPMT1Q8WUK0 201 aaPredicted RBP4.03□□□□□ -1.76
PTCD3-216ENST00000487043 TMEM174Q8WUU8 243 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 EGLN2Q96KS0 407 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 GBP5Q96PP8 586 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 GFM1Q96RP9 751 aaKnown RBP4.03□□□□□ -1.76
PTCD3-216ENST00000487043 WDR77Q9BQA1 342 aaPredicted RBP4.03□□□□□ -1.76
PTCD3-216ENST00000487043 QTRT1Q9BXR0 403 aaKnown RBP4.03□□□□□ -1.76
PTCD3-216ENST00000487043 FAM129AQ9BZQ8 928 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms