RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 AGPSO00116 658 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 ZW10O43264 779 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 URB1O60287 2271 aaKnown RBP16.83■□□□□ 0.28
VIM-205ENST00000485947 CSO75390 466 aaKnown RBP16.83■□□□□ 0.28
VIM-205ENST00000485947 SHBGP04278 402 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 GLB1P16278 677 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 CTPS1P17812 591 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 GPR1P46091 355 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 ZNF844Q08AG5 666 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 ILF3Q12906 894 aaKnown RBP eCLIP16.83■□□□□ 0.28
VIM-205ENST00000485947 RASA2Q15283 850 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 TAF1AQ15573 450 aaPredicted RBP16.83■□□□□ 0.28
VIM-205ENST00000485947 CEP85LQ5SZL2 805 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 KIAA0930Q6ICG6 404 aaPredicted RBP16.83■□□□□ 0.28
VIM-205ENST00000485947 MTERF4Q7Z6M4 381 aaKnown RBP16.83■□□□□ 0.28
VIM-205ENST00000485947 TAF8Q7Z7C8 310 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 TSPAN33Q86UF1 283 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 TDRPQ86YL5 185 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 OR2W6PQ8NHA6 318 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 BLOC1S5Q8TDH9 187 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 GPBAR1Q8TDU6 330 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 STYXQ8WUJ0 223 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 CDKL2Q92772 493 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 FGF11Q92914 225 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 ZNF578Q96N58 590 aaPredicted RBP16.83■□□□□ 0.28
VIM-205ENST00000485947 CAAP1Q9H8G2 361 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 POLR1BQ9H9Y6 1135 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 CYP4F12Q9HCS2 524 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 RAD18Q9NS91 495 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 TREX1Q9NSU2 369 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 SLC24A2Q9UI40 661 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 APPL1Q9UKG1 709 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 BPTFQ12830 3046 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 FAM159BA6NKW6 160 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 C2orf81A6NN90 581 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 NTN3O00634 580 aaPredicted RBP16.82■□□□□ 0.28
VIM-205ENST00000485947 RASGRF2O14827 1237 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 RRP8O43159 456 aaKnown RBP16.82■□□□□ 0.28
VIM-205ENST00000485947 NUDT21O43809 227 aaKnown RBP16.82■□□□□ 0.28
VIM-205ENST00000485947 ZIC2O95409 532 aaPredicted RBP16.82■□□□□ 0.28
VIM-205ENST00000485947 CEACAM5P06731 702 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 PSMA3P25788 255 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 NMBRP28336 390 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 CLDN6P56747 220 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 ERVPABLB-1P60509 514 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 MGAT5Q09328 741 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 SPIDRQ14159 915 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 CLPPQ16740 277 aaPredicted RBP16.82■□□□□ 0.28
VIM-205ENST00000485947 LONRF1Q17RB8 773 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 PDPK2PQ6A1A2 396 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 GLT6D1Q7Z4J2 308 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 GOLGA6L1Q8N7Z2 621 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 FAM46DQ8NEK8 389 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 GABPB2Q8TAK5 448 aaPredicted RBP16.82■□□□□ 0.28
VIM-205ENST00000485947 MFSD3Q96ES6 412 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 CERS2Q96G23 380 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 HIC2Q96JB3 615 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 FCRL3Q96P31 734 aaPredicted RBP16.82■□□□□ 0.28
VIM-205ENST00000485947 SH3GL2Q99962 352 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 CCDC3Q9BQI4 270 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 TMEM168Q9H0V1 697 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 ABCG8Q9H221 673 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 CARS2Q9HA77 564 aaKnown RBP16.82■□□□□ 0.28
VIM-205ENST00000485947 PKD2L2Q9NZM6 624 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 GULP1Q9UBP9 304 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 PCDHGA8Q9Y5G5 932 aa16.82■□□□□ 0.28
VIM-205ENST00000485947 LDB2O43679 373 aa16.81■□□□□ 0.28
VIM-205ENST00000485947 CDH16O75309 829 aa16.81■□□□□ 0.28
VIM-205ENST00000485947 C1QAP02745 245 aa16.81■□□□□ 0.28
VIM-205ENST00000485947 CELA2BP08218 269 aaPredicted RBP16.81■□□□□ 0.28
VIM-205ENST00000485947 MYZAPP0CAP1 466 aa16.81■□□□□ 0.28
VIM-205ENST00000485947 MYF5P13349 255 aa16.81■□□□□ 0.28
VIM-205ENST00000485947 EIF2S3P41091 472 aaKnown RBP16.81■□□□□ 0.28
VIM-205ENST00000485947 ACVR1Q04771 509 aa16.81■□□□□ 0.28
VIM-205ENST00000485947 EIF3IQ13347 325 aaKnown RBP16.81■□□□□ 0.28
VIM-205ENST00000485947 LRP8Q14114 963 aa16.81■□□□□ 0.28
VIM-205ENST00000485947 SKIDA1Q1XH10 827 aa16.81■□□□□ 0.28
VIM-205ENST00000485947 TBC1D25Q3MII6 688 aa16.81■□□□□ 0.28
VIM-205ENST00000485947 KRT71Q3SY84 523 aa16.81■□□□□ 0.28
VIM-205ENST00000485947 C14orf28Q4W4Y0 310 aa16.81■□□□□ 0.28
VIM-205ENST00000485947 PERM1Q5SV97 790 aa16.81■□□□□ 0.28
VIM-205ENST00000485947 LRRC69Q6ZNQ3 347 aa16.81■□□□□ 0.28
VIM-205ENST00000485947 PELI3Q8N2H9 469 aa16.81■□□□□ 0.28
VIM-205ENST00000485947 KYQ8NBH2 561 aa16.81■□□□□ 0.28
VIM-205ENST00000485947 TRIM56Q9BRZ2 755 aaKnown RBP16.81■□□□□ 0.28
VIM-205ENST00000485947 RMI1Q9H9A7 625 aa16.81■□□□□ 0.28
VIM-205ENST00000485947 MED4Q9NPJ6 270 aa16.81■□□□□ 0.28
VIM-205ENST00000485947 MRPL40Q9NQ50 206 aaKnown RBP16.81■□□□□ 0.28
VIM-205ENST00000485947 VPS18Q9P253 973 aa16.81■□□□□ 0.28
VIM-205ENST00000485947 NFKBIL1Q9UBC1 381 aaPredicted RBP16.81■□□□□ 0.28
VIM-205ENST00000485947 ZNF711Q9Y462 761 aa16.81■□□□□ 0.28
VIM-205ENST00000485947 SPO11Q9Y5K1 396 aa16.81■□□□□ 0.28
VIM-205ENST00000485947 ZNF106Q9H2Y7 1883 aaKnown RBP16.8■□□□□ 0.28
VIM-205ENST00000485947 C1orf232A0A0U1RR37 186 aa16.8■□□□□ 0.28
VIM-205ENST00000485947 BRINP1O60477 761 aa16.8■□□□□ 0.28
VIM-205ENST00000485947 SOD1P00441 154 aa16.8■□□□□ 0.28
VIM-205ENST00000485947 LPOP22079 712 aaPredicted RBP16.8■□□□□ 0.28
VIM-205ENST00000485947 SPINT3P49223 89 aa16.8■□□□□ 0.28
VIM-205ENST00000485947 ZNF140P52738 457 aaPredicted RBP16.8■□□□□ 0.28
VIM-205ENST00000485947 KBTBD12Q3ZCT8 623 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms