RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 KRT222Q8N1A0 295 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 EPS8L3Q8TE67 593 aaKnown RBP12.05□□□□□ -0.48
SDC1-206ENST00000482879 PANX3Q96QZ0 392 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 OR2M4Q96R27 311 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 CCM2Q9BSQ5 444 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 TSSK1BQ9BXA7 367 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 SLC13A1Q9BZW2 595 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 ROPN1BQ9BZX4 212 aaPredicted RBP12.05□□□□□ -0.48
SDC1-206ENST00000482879 TCEAL2Q9H3H9 227 aaPredicted RBP12.05□□□□□ -0.48
SDC1-206ENST00000482879 SMOC1Q9H4F8 434 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 ERVMER34-1Q9H9K5 563 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 PPCSQ9HAB8 311 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 ROPN1Q9HAT0 212 aaPredicted RBP12.05□□□□□ -0.48
SDC1-206ENST00000482879 CAPN10Q9HC96 672 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 FSCN3Q9NQT6 498 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 KLF15Q9UIH9 416 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 ZNF180Q9UJW8 692 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 GMEB2Q9UKD1 530 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 VWA7Q9Y334 891 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 HCN4Q9Y3Q4 1203 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 NFS1Q9Y697 457 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 DNMT3AQ9Y6K1 912 aaPredicted RBP12.05□□□□□ -0.48
SDC1-206ENST00000482879 DGKBQ9Y6T7 804 aa12.05□□□□□ -0.48
SDC1-206ENST00000482879 KHNYNO15037 678 aaKnown RBP12.04□□□□□ -0.48
SDC1-206ENST00000482879 VPS26AO75436 327 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 KRT38O76015 456 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 CSF2P04141 144 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 SYPP08247 313 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 ACP5P13686 325 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 CTSEP14091 401 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 IRX4P78413 519 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 GRIK2Q13002 908 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 BMPR2Q13873 1038 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 INSCQ1MX18 579 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 LGSNQ5TDP6 509 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 FAM45BPQ6NSW5 357 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 LRIG3Q6UXM1 1119 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 HDXQ7Z353 690 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 C11orf96Q7Z7L8 435 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 AMZ2Q86W34 360 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 TDRPQ86YL5 185 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 DCLK2Q8N568 766 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 ACVR1CQ8NER5 493 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 FAM45AQ8TCE6 357 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 LKAAEAR1Q8TD35 194 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 ELMO1Q92556 727 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 FAM136AQ96C01 138 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 LINC00615Q96LM1 132 aaPredicted RBP12.04□□□□□ -0.48
SDC1-206ENST00000482879 ZIM3Q96PE6 472 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 GPR22Q99680 433 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 TMEM109Q9BVC6 243 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 NUSAP1Q9BXS6 441 aaKnown RBP12.04□□□□□ -0.48
SDC1-206ENST00000482879 TMEM168Q9H0V1 697 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 CAAP1Q9H8G2 361 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 SARS2Q9NP81 518 aaKnown RBP12.04□□□□□ -0.48
SDC1-206ENST00000482879 TM7SF3Q9NS93 570 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 PSMC3IPQ9P2W1 217 aaPredicted RBP12.04□□□□□ -0.48
SDC1-206ENST00000482879 FAM8A1Q9UBU6 413 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 SLC23A2Q9UGH3 650 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 APOBEC3BQ9UH17 382 aaKnown RBP12.04□□□□□ -0.48
SDC1-206ENST00000482879 TBK1Q9UHD2 729 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 SLC39A10Q9ULF5 831 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 PLEKHM1Q9Y4G2 1056 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 PCDH15Q96QU1 1955 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 OTOGLQ3ZCN5 2332 aa12.04□□□□□ -0.48
SDC1-206ENST00000482879 ARID1BQ8NFD5 2236 aaPredicted RBP12.03□□□□□ -0.48
SDC1-206ENST00000482879 IQANK1A0A1B0GTG1 560 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 MGAT4DA6NG13 374 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 H3BM21 787 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 ARHGAP33O14559 1287 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 KCNJ13O60928 360 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 CDH16O75309 829 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 KRT37O76014 449 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 LMNAP02545 664 aaKnown RBP12.03□□□□□ -0.48
SDC1-206ENST00000482879 SNRPAP09012 282 aaKnown RBP12.03□□□□□ -0.48
SDC1-206ENST00000482879 GSTM1P09488 218 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 NME1P15531 152 aaKnown RBP12.03□□□□□ -0.48
SDC1-206ENST00000482879 VCLP18206 1134 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 CNTFP26441 200 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 CCR7P32248 378 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 SLC12A2P55011 1212 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 CDKN2DP55273 166 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 TAS2R39P59534 338 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 HNRNPKP61978 463 aaKnown RBP eCLIP12.03□□□□□ -0.48
SDC1-206ENST00000482879 ARHGAP8P85298 464 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 CTBSQ01459 385 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 POU4F1Q01851 419 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 GSTM4Q03013 218 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 USP10Q14694 798 aaKnown RBP12.03□□□□□ -0.48
SDC1-206ENST00000482879 TCEA2Q15560 299 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 HLA-BQ31612 363 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 PLA2G2CQ5R387 149 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 UGT3A1Q6NUS8 523 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 IL27RAQ6UWB1 636 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 NAPRTQ6XQN6 538 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 OTOAQ7RTW8 1153 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 CFAP206Q8IYR0 622 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 OXR1Q8N573 874 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 ANKRD7Q92527 254 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 KCNJ9Q92806 393 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms